PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g51830.1
Common NameLOC4339823, Os05g0597100, OsJ_19788, OSNPB_050597100
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 298aa    MW: 32547.1 Da    PI: 4.2783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g51830.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-05272294223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+k+F++ + L++H +  H
  LOC_Os05g51830.1 272 SCKSCSKTFNSEMALQSHSKAkH 294
                       7*****************98777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.408271297IPR007087Zinc finger, C2H2
PROSITE patternPS000280273294IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFWGLEVKP GQTVKCEPED ERFLHLSQAA LGESKKGSDN AVMYVKTDDQ KLVIGTLSAD  60
KFPQIQFDLV FDKEFELSHT SKTASVFFSG YKVSQPAEED EMDFDSEEVE DEEEEEKIIP  120
APRANGKVEG KENEQKKQGK TDSSASKSKA AVNDDDDDDD SDEDDSEDED LSPEDDDDDS  180
SEDDSSEDDE DESDEEDTPK KPETGKRKVA EIVLKTPSSD KKAKIATPSG QKTGDKKGVH  240
VATPHPAKQA SKTPVNDKSK EKSPKSGGGS ISCKSCSKTF NSEMALQSHS KAKHPAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.85190.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329828680.0
Expression AtlasQ0DFD6-
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. The encoded protein directly binds to the promoter region of OsIDS1 resulting in reduced transcription of OsIDS1.
    [PMID: 29991671]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g51830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g51830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728450.0AK072845.1 Oryza sativa Japonica Group cDNA clone:J023142J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639422.10.0histone deacetylase HDT2
SwissprotQ9M4U58e-99HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLQ0DFD60.0Q0DFD6_ORYSJ; Os05g0597100 protein
STRINGOS05T0597100-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-29histone deacetylase 3
Publications ? help Back to Top
  1. Cho LH,Yoon J,Wai AH,An G
    Histone Deacetylase 701 (HDT701) Induces Flowering in Rice by Modulating Expression of OsIDS1.
    Mol. Cells, 2018. 41(7): p. 665-675
    [PMID:29991671]