PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g50700.1 | ||||||||
Common Name | LOC9267508, OSJNBb0035N21.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 330aa MW: 35868.2 Da PI: 6.6272 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.7 | 1.8e-26 | 174 | 232 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+s C+++k vers e p v++itY eH h LOC_Os05g50700.1 174 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACMARKMVERSPEKPGVLVITYIAEHCHA 232 699************************9989*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 28.369 | 168 | 234 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-26 | 169 | 234 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-23 | 171 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-31 | 173 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-21 | 175 | 231 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MTITHASSLS RFHPLLKKLI MEYSNDWDLQ ALVRSCGTAV ADSEPEPPAA PSTTRRAEAE 60 TVFVGRAGGV PEFVGQPVRS SAASFYDLEY LDLYHERPRA PFLVTAPSTS RERGEGGEHE 120 VLISFPAIAS TSGQGRKQPG RKPGVRTARP KRSKKSQLKK VVCEVPVADG GVSTDLWAWR 180 KYGQKPIKGS PYPRGYYKCS SLKACMARKM VERSPEKPGV LVITYIAEHC HAVPTQLNSL 240 AGTTRNNKPA SPDQQQQQQP SPGGASTDEA AAAAAKTEDS ADTTCSMADD ENDLWAPVEM 300 DMNDFFGPFD DDLDHFLDDD AVLGRRLSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-18 | 155 | 235 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 4e-18 | 155 | 235 | 2 | 80 | Disease resistance protein RRS1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75HY9 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g50700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g50700 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134929 | 0.0 | AC134929.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0035N21, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638808.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | Q75HY9 | 0.0 | Q75HY9_ORYSJ; Uncharacterized protein OSJNBb0035N21.5 | ||||
STRING | ORUFI05G29280.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 | Representative plant | OGRP11408 | 4 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 3e-36 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g50700.1 |
Entrez Gene | 9267508 |