PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os05g50610.1 | ||||||||
Common Name | LOC4339739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 504aa MW: 54999.6 Da PI: 9.2857 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.1e-30 | 188 | 244 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s +p sYYrCt ++C vkk+vers++dp++v++tYeg+H+h+ LOC_Os05g50610.1 188 EDGYRWRKYGQKAVKNSSYP-SYYRCTAPRCGVKKRVERSEQDPSMVITTYEGQHTHP 244 8*******************.9***********************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-32 | 172 | 246 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-25 | 179 | 246 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.129 | 182 | 246 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-35 | 187 | 245 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-23 | 188 | 244 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 504 aa Download sequence Send to blast |
MSGPGGGGHG LYEDHPAAAG FLPFDHDDDV VASFFFGRSA ASGGGAGAGA GAGDDDGVGL 60 ITPYSSITDY LQGFLQDPVY ASSPLGGDAA VKHETVVDHP SQAGGVAAAP ATPNSSVLSS 120 SSEAAGGDDL RRCKKGRRPE DEEEEEIDDE GSAVQSCKTN KMKNKKGAKK EREPRVAFMT 180 KSEVDHLEDG YRWRKYGQKA VKNSSYPSYY RCTAPRCGVK KRVERSEQDP SMVITTYEGQ 240 HTHPSPVSYH MHRQQGLMHV SARGVMPGAA GAYQFGAPPP PLLGFDEALA ARSQDTVLVS 300 QEDRLSQQQR SLYYRVDVQS CWAADRSRAH NCITKGKRKP GLGPNNTGAT WELGRNPKTH 360 RSRLAPGRTP HQQDPLRLLQ RLGGDYLYRA RRGVHFTHTT LLTRITQPVG ISHVGRPPSF 420 HDKAFPKPIQ VYHMPTRGVP DQQQESVLKC ESGKTVHPAQ DVQRWLALLE IWSLILEILA 480 LRVFGLRNYT RNGTTQQTAK MKP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-23 | 178 | 246 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-23 | 178 | 246 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.29987 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 33519201 | 0.0 | ||||
Expression Atlas | Q7XAA1 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os05g50610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os05g50610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY341857 | 0.0 | AY341857.1 Oryza sativa (japonica cultivar-group) WRKY17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637708.1 | 0.0 | uncharacterized protein LOC4339739 isoform X1 | ||||
TrEMBL | Q7XAA1 | 0.0 | Q7XAA1_ORYSJ; WRKY17 | ||||
STRING | ORUFI05G29210.1 | 1e-162 | (Oryza rufipogon) | ||||
STRING | OS05T0583000-01 | 1e-162 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-38 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os05g50610.1 |
Entrez Gene | 4339739 |