PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g50350.1 | ||||||||
Common Name | LOC107277648, Os05g0579700, OsJ_19670, OSNPB_050579700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 112aa MW: 12359.6 Da PI: 10.0299 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 25 | 70 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 g WT+ +++ +a + + ++ +W+ Iar+mg +++ +++ ++ LOC_Os05g50350.1 25 GGWTQRQNKQFECALAVYDKEtpdRWHNIARYMGGAKSADEVRRHF 70 56*****************99*************889*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 8.7E-6 | 23 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-5 | 25 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.93E-11 | 25 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.00E-6 | 27 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MASAAGSKQQ QAMMSLPSSR GGGGGGWTQR QNKQFECALA VYDKETPDRW HNIARYMGGA 60 KSADEVRRHF DHLVEDVSRI ESGRVPFPRY SSSSSSRGAD DGNRSRYLKY Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-25 | 18 | 111 | 2 | 93 | RADIALIS |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | B9FLS2 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g50350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g50350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836452 | 0.0 | CT836452.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015B15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639028.1 | 4e-78 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | B9FLS2 | 9e-77 | B9FLS2_ORYSJ; Os05g0579700 protein | ||||
STRING | OS05T0579700-00 | 1e-77 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-28 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g50350.1 |
Entrez Gene | 107277648 |