PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g50340.1
Common NameLOC4339715, Os05g0579600, OsJ_19669, OSNPB_050579600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 91aa    MW: 10371.8 Da    PI: 9.4244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g50340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-07854346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       W +   +l+ +a + + ++   +W+ Iar +g g++++++k ++ +
  LOC_Os05g50340.1  8 QWPQKQNKLFEQALAVYDKEtpdRWHNIARAVGGGKSAEDVKRYYEM 54
                      68888899**********99************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-6558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-5862IPR009057Homeodomain-like
SuperFamilySSF466892.48E-10864IPR009057Homeodomain-like
CDDcd001677.11E-5955No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAQQARAQWP QKQNKLFEQA LAVYDKETPD RWHNIARAVG GGKSAEDVKR YYEMLEEDIK  60
HIESGKVPFP AYRCPAAAGY QAERLKHLKI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-289901192RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1020791e-153leaf| panicle
Os.824641e-153leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160108931e-153
Expression AtlasQ0DFN8-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g50340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g50340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2415281e-151AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankCT8363541e-151CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638815.16e-62protein RADIALIS-like 3
SwissprotQ1A1734e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0E0DUU71e-60A0A0E0DUU7_9ORYZ; Uncharacterized protein
TrEMBLA2Y7V61e-60A2Y7V6_ORYSI; Uncharacterized protein
TrEMBLI1PY951e-60I1PY95_ORYGL; Uncharacterized protein
TrEMBLQ0DFN81e-60Q0DFN8_ORYSJ; Os05g0579600 protein
STRINGOS05T0579600-012e-61(Oryza sativa)
STRINGORGLA05G0234300.12e-61(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-31RAD-like 6