PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g50130.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 307aa    MW: 34338.9 Da    PI: 9.8836
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g50130.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox231.3e-071281532853
                       HHHHHHHHHCTS-HHHHHHHHHHHHH CS
          Homeobox  28 eereeLAkklgLterqVkvWFqNrRa 53 
                       ++++eLA++l+L  +qV  WF NrR 
  LOC_Os05g50130.1 128 KQKKELADRLNLRISQVDAWFRNRRL 153
                       789**********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000861.46E-491152No hitNo description
Gene3DG3DSA:1.10.10.604.0E-791153IPR009057Homeodomain-like
SuperFamilySSF466898.13E-6120158IPR009057Homeodomain-like
PfamPF000464.2E-5128153IPR001356Homeobox domain
PROSITE profilePS500719.426128158IPR001356Homeobox domain
SMARTSM003401.3E-8220263IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEPMGILKCP SSLKLSVAVP GHALNPFSDG GSGSGSGSGS GCNNNNTREL GIHLDLDRPY  60
AREELPQQGG SMEVQKGEER GGVRHNSSNH RRLSRVQSKQ LDEFYRVNHT VDSTSHLRSR  120
KLMEHFQKQK KELADRLNLR ISQVDAWFRN RRLSHYYVGL TFLLPHMSVS VEDVNPMIPQ  180
YKSVSSVEQV QSSSSAPVTV MLLLVIPFRL IFTNLQSKQK STEMECAYLK ECFNKLKEEN  240
HRLQLQVEQL RSTSLQLQLQ LQLHSERVAT APTGQQAGTS AAARIFTLPL SGYNPSRGTW  300
FSPNAH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g50130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g50130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985711e-151AC098571.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B10, complete sequence.
GenBankAP0149611e-151AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638698.13e-83homeobox-leucine zipper protein HOX3
TrEMBLA0A0E0PRM30.0A0A0E0PRM3_ORYRU; Uncharacterized protein
STRINGORUFI05G28790.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1906588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.13e-08homeobox-leucine zipper protein 18