PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49620.1
Common NameLOC4339665, Os05g0571200, OsJ_19612, OSNPB_050571200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 278aa    MW: 29872.4 Da    PI: 5.6222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49620.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY825.9e-26105165158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                       ldDg +WrKYGqK++ g+++pr+Y+rCt++   gC+++k+v+r++ dp +++++Y g+H++
  LOC_Os05g49620.1 105 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhtqGCNATKQVQRADGDPLLFDVVYLGDHTC 165
                       58***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-2792167IPR003657WRKY domain
SuperFamilySSF1182901.03E-2499167IPR003657WRKY domain
PROSITE profilePS5081121.264100163IPR003657WRKY domain
SMARTSM007741.3E-39105167IPR003657WRKY domain
PfamPF031064.6E-25106165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MVELCGGEGE GQIMLATELA QLRAMARELE AKMDPDRVAA RELCRALASS VDRSIRLAAS  60
CFPPPEHPPP AAGNAGRDAA FKKRKGMAKV RRQVRVTSVQ DTASLDDGLS WRKYGQKDIL  120
GAKYPRAYFR CTHRHTQGCN ATKQVQRADG DPLLFDVVYL GDHTCGQAAV AAAAQSAPPE  180
HAGQEQQRQS SLLAAGTEGI HQQVVAEPMA APFLFTSTAA GGVDDGYFSF ISPANSDCQF  240
SSDFSAGSVG VDMDHEARFE DLFSSTLEFF QSEIQNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22104165768OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.879720.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172406180.0
Expression AtlasQ0DFT7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49620
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083890.0AK108389.1 Oryza sativa Japonica Group cDNA clone:002-142-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638413.10.0probable WRKY transcription factor 41
TrEMBLQ0DFT70.0Q0DFT7_ORYSJ; BHLH transcription factor
STRINGOS05T0571200-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.25e-35WRKY family protein