PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g49310.1 | ||||||||
Common Name | LOC4339647, Os05g0568200, OsJ_19586 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 26862.7 Da PI: 6.3597 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd+ lv++++ G g W+t ar g++Rt+k+c++rw++yl LOC_Os05g49310.1 22 KGPWTMEEDLSLVNYIAANGEGAWNTLARAAGLNRTGKSCRLRWLNYL 69 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+v++ +++G++ W++Iar+++ gRt++++k++w++ LOC_Os05g49310.1 75 RGNITPEEHTLIVELQARWGNR-WSKIARYLP-GRTDNEVKNFWRT 118 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.937 | 17 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-29 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-11 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-14 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-21 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.03E-8 | 24 | 69 | No hit | No description |
PROSITE profile | PS51294 | 24.281 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.28E-12 | 79 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MQYTVEGSGG GGVQTVEAAV RKGPWTMEED LSLVNYIAAN GEGAWNTLAR AAGLNRTGKS 60 CRLRWLNYLR PDVRRGNITP EEHTLIVELQ ARWGNRWSKI ARYLPGRTDN EVKNFWRTKI 120 QKKHRKSTDG IYATTTSESI MPAATVHQNT VAEDQGSSSV SGRTTTATVA VTQEYATEAP 180 PPSGMSSGSY LDQLQPGYAS SIHGGQDGGA AAAAAGDVVV SDEFLAASSD NFWALEDLWP 240 TVQSLHGNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 22 | 123 | 7 | 107 | B-MYB |
1h8a_C | 3e-24 | 14 | 123 | 19 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115465512 | 0.0 | ||||
Expression Atlas | Q0DFV3 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in floral tissues. expressed in all four whorls of the flower, in the anther vascular tissue and in cells at the junction between anther and stamen filaments. Detected in the nectaries and ovules. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19325888, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g49310.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g49310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 0.0 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AC120990 | 0.0 | AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639020.1 | 0.0 | transcription factor MYB21 | ||||
Swissprot | Q9LK95 | 7e-71 | MYB21_ARATH; Transcription factor MYB21 | ||||
TrEMBL | Q0DFV3 | 0.0 | Q0DFV3_ORYSJ; Os05g0568200 protein | ||||
STRING | ORUFI05G28080.1 | 1e-151 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 1e-70 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g49310.1 |
Entrez Gene | 4339647 |
Publications ? help Back to Top | |||
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