PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49240.1
Common NameLOC107277348, Os05g0567600, OsJ_19579, OSNPB_050567600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 86aa    MW: 9778.77 Da    PI: 5.8869
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-071260146
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +  W+  E + + +a + +G +   +W+++a+ mg  +++++++ ++ +
  LOC_Os05g49240.1 12 KSEWSRKENKMFEEALAYYGEDtpnRWDKVASAMGGIKSAEEIRCHYED 60
                      578********************************668******99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.155762IPR017877Myb-like domain
SMARTSM007175.5E-51164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-41162IPR009057Homeodomain-like
SuperFamilySSF466896.88E-121270IPR009057Homeodomain-like
PfamPF002491.8E-61261IPR001005SANT/Myb domain
CDDcd001671.43E-41458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MSGSRSSSPN SKSEWSRKEN KMFEEALAYY GEDTPNRWDK VASAMGGIKS AEEIRCHYED  60
LTDDVKTIES GRVQFPKYKT QGYWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-22682277RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.463231e-144callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379907561e-144
Expression AtlasB9FI64-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209861e-142AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAK1211331e-142AK121133.1 Oryza sativa Japonica Group cDNA clone:J023075P20, full insert sequence.
GenBankAP0149611e-142AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639473.13e-58protein RADIALIS-like 3
SwissprotQ6NNN02e-23RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D3GAY46e-57A0A0D3GAY4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0A2X86e-57A0A0E0A2X8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DUQ96e-57A0A0E0DUQ9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0L5V46e-57A0A0E0L5V4_ORYPU; Uncharacterized protein
TrEMBLA0A0E0PRD26e-57A0A0E0PRD2_ORYRU; Uncharacterized protein
TrEMBLA2Y7K36e-57A2Y7K3_ORYSI; Uncharacterized protein
TrEMBLB9FI646e-57B9FI64_ORYSJ; Os05g0567600 protein
TrEMBLI1PY126e-57I1PY12_ORYGL; Uncharacterized protein
STRINGOGLUM05G27750.11e-57(Oryza glumipatula)
STRINGOMERI03G29410.11e-57(Oryza meridionalis)
STRINGOMERI05G22130.11e-57(Oryza meridionalis)
STRINGORUFI05G28020.11e-57(Oryza rufipogon)
STRINGOS05T0567600-001e-57(Oryza sativa)
STRINGOPUNC05G23730.11e-57(Oryza punctata)
STRINGORGLA05G0226000.11e-57(Oryza glaberrima)
STRINGOBART05G26130.11e-57(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-22RAD-like 1