PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49210.1
Common NameOJ1781_H11.12
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 626aa    MW: 65329.4 Da    PI: 7.2683
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.4e-30364422259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +v+++tYeg+Hnh+
  LOC_Os05g49210.1 364 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITTYEGNHNHP 422
                       7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-33348424IPR003657WRKY domain
SuperFamilySSF1182901.23E-27356424IPR003657WRKY domain
PROSITE profilePS5081129.987358424IPR003657WRKY domain
SMARTSM007749.7E-37363423IPR003657WRKY domain
PfamPF031061.1E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MESYVGVKGK NVVGGGDVGR EMPVAPPSSS SAAVGMVEFP AAAAGLGYAG MTAKEAGGGY  60
QERRVVVGEM DFFKTAEKRG ERKEPPPATA TAAASGHAGA SPDDLSLNKD DLTINMGLLV  120
GRRRNSGSEE SIVDDGGVSS NDEEHREAKA ALAVTKAEIG RLSEENKRLK NMLSNVTTKY  180
NSLQMQFVTL MQQRRSVLAA PIHQQELLDP EKKEQEGSQQ QQQQLIPRQF ISLGSASLQP  240
DVEAPHSVVV VGGDVCAPSS SNPDAAVPAM MPLPHFDHHN HHHPIHGGRE RGSSPAEADH  300
HRHHQQEQPP PPPQQQQQLP PSWLPADKVP RFLPGKGPEP VPEAATMRKA RVSVRARSDA  360
PMISDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTV LITTYEGNHN  420
HPLPPAAMAM ASTTAAAASM LLSGSMPSAD GSLMAGSNFL ARAVLPCSST VATISASAPF  480
PTVTLDLTQT APPPPPASST QPQPPRPEPA QLQAALAEAA RPVALPQLFG QKLYDQSKLS  540
AVQAVAGTKG SDGGALADTV NAATAAIASD PNFTAVLAAA LTSYIGSRSG SGGAGAGGSS  600
GTVQPLMSGG GDSCSRDDKI GEQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21354424877Probable WRKY transcription factor 4
2lex_A1e-21354424877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.61441e-126callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO508439611e-126
Expression AtlasQ688W5-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881266.10.0probable WRKY transcription factor 31
TrEMBLA0A0E0PRC80.0A0A0E0PRC8_ORYRU; Uncharacterized protein
TrEMBLQ688W50.0Q688W5_ORYSJ; Putative WRKY transcription factor
STRINGORUFI05G27980.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-89WRKY family protein