PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g49010.1
Common NameOsJ_19559
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 283aa    MW: 30273.6 Da    PI: 8.2477
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g49010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18125175356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+++AeIrd +    r +r++lg+f ta+eAa a++ a+++++g+
  LOC_Os05g49010.1 125 YRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDMAALRMRGH 175
                       9*******.**********433...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-30124183IPR001471AP2/ERF domain
SMARTSM003805.9E-34124188IPR001471AP2/ERF domain
PROSITE profilePS5103223.248124182IPR001471AP2/ERF domain
PfamPF008471.3E-14124175IPR001471AP2/ERF domain
PRINTSPR003672.8E-10125136IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21125183IPR016177DNA-binding domain
CDDcd000182.37E-21132182No hitNo description
PRINTSPR003672.8E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAIGAAPASN QPHDTSNILE NVWASIMTSS SSPAVSSSVA VSSSAVTGQE ENSAILQRLP  60
SLGRWISMGA EEWDELLLSG AALASESSGE LQLVAASPGD HNQVVGGGGG ANYRTTATAA  120
ARRSYRGVRR RPWGKFAAEI RDTRRRGARV WLGTFATADE AALAYDMAAL RMRGHRAHLN  180
FPLATVQKHL ERDLAGGRSS SDQTSTRARR RRRPRANTTT DAAARSVVFS GVQTATNCDH  240
MVSFASEKDQ VSMQECSKSD AGVIDFEEIG GEYWDYLFPP LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-26123183464ATERF1
3gcc_A9e-26123183464ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FI52
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g49010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g49010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241430.0AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.11e-119PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A0E0HIH50.0A0A0E0HIH5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PRA30.0A0A0E0PRA3_ORYRU; Uncharacterized protein
TrEMBLA2Y7H70.0A2Y7H7_ORYSI; Uncharacterized protein
TrEMBLB9FI520.0B9FI52_ORYSJ; Uncharacterized protein
TrEMBLI1PXZ20.0I1PXZ2_ORYGL; Uncharacterized protein
STRINGORUFI05G27790.10.0(Oryza rufipogon)
STRINGONIVA05G27810.10.0(Oryza nivara)
STRINGORGLA05G0224000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.17e-12ERF family protein