PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g48850.1 | ||||||||
Common Name | LOC4339612, Os05g0563000, OsJ_19547, OSJNBb0053D02.2, OSNPB_050563000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 34100.4 Da PI: 9.4414 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106 | 4.7e-33 | 65 | 206 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ LOC_Os05g48850.1 65 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKVHsde 152 799************.99****998885665442...133333665557**********.555666688******************844455 PP NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l LOC_Os05g48850.1 153 vdggETRWHKTGKTRPVMA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 206 5544778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-38 | 56 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.064 | 65 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.2E-15 | 66 | 206 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTWCNSFSDV RTAVDSSLSP AAAVAAAAGK KAAASLAVLV KMCPSCGHRA RYEQETTTIQ 60 DLPGLPAGVK FDPTDQELLE HLEGKARPDS RKLHPLVDEF IPTIEGENGI CYTHPERLPG 120 VSKDGLVRHF FHRPSKAYTT GTRKRRKVHS DEVDGGETRW HKTGKTRPVM ANGRPRGYKK 180 ILVLYTNYGK QRKPEKTNWV MHQYHLGSDE EERDGELVVS KVFFQTQPRQ CGSTAAAAAA 240 KEASAAVAAA VVNSNYSIVH GHQGGGGGSF LKEANVVHEF YDPAATMGYR PPAPAAHFAP 300 NFAVHAARNS FGGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-11 | 65 | 206 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53950 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986192 | 0.0 | ||||
Expression Atlas | Q6AUG9 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g48850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g48850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100983 | 0.0 | AK100983.1 Oryza sativa Japonica Group cDNA clone:J023145A15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639992.1 | 0.0 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-126 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A0D3GAT2 | 0.0 | A0A0D3GAT2_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PR83 | 0.0 | A0A0E0PR83_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PXX7 | 0.0 | I1PXX7_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6AUG9 | 0.0 | Q6AUG9_ORYSJ; Os05g0563000 protein | ||||
STRING | ORUFI05G27670.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0563000-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA05G0222500.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART05G25770.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-118 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g48850.1 |
Entrez Gene | 4339612 |
Publications ? help Back to Top | |||
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