PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g46610.1
Common NameLOC4339490, Os05g0543600, OSNPB_050543600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 313aa    MW: 33606.2 Da    PI: 5.0532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g46610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88e-161663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l++ + ++G g+W+++++  g+ R++k+c++rw +yl
  LOC_Os05g46610.1 16 KGLWSPEEDDKLYNHIIRHGVGCWSSVPKLAGLQRCGKSCRLRWINYL 63
                      678*******************************************97 PP
2Myb_DNA-binding52.61.1e-1669113147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++++E++l+v +++ lG++ W+ Ia++++ gRt++++k++w++ 
  LOC_Os05g46610.1  69 RGSFSQQEEDLIVALHEILGNR-WSQIASHLP-GRTDNEIKNFWNSC 113
                       899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-231166IPR009057Homeodomain-like
PROSITE profilePS5129415.9411163IPR017930Myb domain
SuperFamilySSF466891.88E-2814110IPR009057Homeodomain-like
SMARTSM007175.5E-121565IPR001005SANT/Myb domain
PfamPF002491.7E-141663IPR001005SANT/Myb domain
CDDcd001675.74E-111963No hitNo description
PROSITE profilePS5129426.03864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2667118IPR009057Homeodomain-like
SMARTSM007172.5E-1668116IPR001005SANT/Myb domain
PfamPF002496.5E-1569113IPR001005SANT/Myb domain
CDDcd001671.52E-1171111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRLSSCGGV QAKLRKGLWS PEEDDKLYNH IIRHGVGCWS SVPKLAGLQR CGKSCRLRWI  60
NYLRPDLKRG SFSQQEEDLI VALHEILGNR WSQIASHLPG RTDNEIKNFW NSCLKKKLRQ  120
RGLDPATHKP IAAAAAAATS SESAVTQVDE DHKPHGAAAA AAAADGLAAN AKQSVFDPFP  180
VTDFGAGFDL GAANMAAALY GSHPDDGAGF VADYSSVLDV SENLGYGESS SNSSNWTCAE  240
VSNVLDSEVL NWAASAGADA AAKAEPFADM EQQHSGYGGE YQVEDDATLE HKFSLPCHEQ  300
SLAQFDFNLE YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27141185108B-MYB
1h8a_C2e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113119LKKKLRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.486080.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasJ9PDC7
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Germinating seed and apical meristem of shoot and root.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g46610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g46610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874690.0AK287469.1 Oryza sativa Japonica Group cDNA, clone: J043021L20, full insert sequence.
GenBankGU0467880.0GU046788.1 Oryza sativa Japonica Group cultivar Dongjin-byeo myb-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638185.10.0myb-related protein Hv33
SwissprotP200271e-121MYB3_HORVU; Myb-related protein Hv33
TrEMBLJ9PDC70.0J9PDC7_ORYSJ; Myb-related protein
STRINGOS05T0543600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-75myb domain protein 86