PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g46370.1
Common NameLOC9269440, Os05g0541400, OSNPB_050541400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 417aa    MW: 42671.3 Da    PI: 6.6272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g46370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.4e-06312352954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  LOC_Os05g46370.1 312 ARLRRERVSERLRVLQRLVPGG-----SKMDTATMLDEAASYLKFL 352
                       599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.259303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12309361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-10309357No hitNo description
SMARTSM003532.2E-11309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9312360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MYMDAFGWSA PAAPCQPSCG PGGDDDDDVL LAAVLGASFE LHSLVDGGGN GAAGAVRSDD  60
AYGLDVDLPS HQMSLLRCQD GLSALHGDAS PTAAAAAFLD SVDVLPVPAI AGATHDDGGL  120
LDRFAFPNVA ETTTVQAAAS NTAFSGYSSN TTGGGNISSG ESNTYTEVAS TPCAVSTTTT  180
TTALPPSKRK LPEKYPVVGT SPTTKTTTTS ETAAERRSTK RGAGGSSSIT FGGGCHGAGA  240
AAALLGYGRG YEPDTEAIAQ VKEMIYRAAA MRPVTLGGPA SASDPSSRPP PPPQRPRRKN  300
VRISSDPQTV AARLRRERVS ERLRVLQRLV PGGSKMDTAT MLDEAASYLK FLKSQLEALE  360
TLGNGNGNGN LLHHGYYTGS RNATATAATG SSNSTVLAFG RDGLAGFVKS NRNLQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294298RPRRK
2312317RLRRER
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WQ90
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g46370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g46370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638480.10.0transcription factor LATE FLOWERING
SwissprotA0A0P0WQ900.0LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A0E0PQK60.0A0A0E0PQK6_ORYRU; Uncharacterized protein
STRINGOS05T0541400-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-24bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]