PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g45954.1
Common NameAP2D4, Os05g0536250, OSNPB_050536250
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 432aa    MW: 47683.4 Da    PI: 8.2816
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g45954.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.75e-1296148855
               AP2   8 wdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  LOC_Os05g45954.1  96 RHRWTGRFEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 148
                       799***********888855666447*************************98 PP
2AP251.23.2e-16191242155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++++grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  LOC_Os05g45954.1 191 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYKG 242
                       89****************99966...3.6***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103218.42676156IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1395157IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1396157IPR001471AP2/ERF domain
PfamPF008471.0E-896148IPR001471AP2/ERF domain
SMARTSM003805.7E-1896162IPR001471AP2/ERF domain
CDDcd000181.92E-24191250No hitNo description
PfamPF008474.0E-11191242IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-17191251IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-17192250IPR001471AP2/ERF domain
PROSITE profilePS5103218.979192250IPR001471AP2/ERF domain
SMARTSM003801.7E-26192256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDHSIMMVKN EIENYSGSSP AMIINALEGG AEAGPVVRRR RREPSLLAPI NGDGDTNGGG  60
IGKSSLSGIT VKRSSRFRGV SRFRACRDDK KMLSCRHRWT GRFEAHLWDK NSWNPTQRKK  120
GKQVYLGAYD EEEAAARAYD LAALKYWGPT TYTNFPVMDY EKELKIMENL TKEEYLASLR  180
RKSSGFSRGV SKYRGVARHH QNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY  240
KGVNAVTNFD LRSYITWLKP TPAHVAMNPA EALAMQIPVD HFLPMETQMM MLPQSNPFTS  300
YHNAQSLGGG DGGSSSTNNQ EASMIISPSG SSRKRSSSTA LSLLLKSSMF RQLVEKNSDA  360
GEENGGEMRE PGAHPGEGYE YHNFFQGDAA PDMDMCDLLS SGNVHAASGS AGFEEDIACY  420
SGFGSMQSLQ Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122PTQRKKGKQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2TQ39
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g45954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g45954
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851120.0AY685112.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D4 (AP2D4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881488.10.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLQ2TQ390.0Q2TQ39_ORYSJ; Os05g0536250 protein
STRINGOS05T0536250-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.35e-74AP2 family protein