PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os05g45410.1

Common Name

HSF10, HSF15, HSFA4D, LOC4339409, OJ1131_E09.10, Os05g0530400, OsJ_018517, OsJ_19305, SP17, SPL7

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HSF

Protein Properties

Length: 460aa MW: 51163.9 Da PI: 4.9482

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os05g45410.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.5e-34	21	112	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl k+ye++ed+++++++sw g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+++ll LOC_Os05g45410.1 21 FLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLL 104 9**************************************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k LOC_Os05g45410.1 105 KNIHRRKP 112 ***985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	4.5E-61	17	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.0E-37	17	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.03E-35	17	110	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	2.6E-19	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.4E-30	21	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	60	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.6E-19	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0020039	anatomy	leaf lamina

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MESSNLGGGG GGGGGGGPPP FLIKTYEMVE DAATNHVVSW GPGGASFVVW NPLDFSRDLL 60 PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH THLLKNIHRR KPVHSHSLQN 120 QINGPLAESE RRELEEEINR LKYEKSILVA DLQRQNQQQY VINWQMQAME GRLVAMEQRQ 180 KNIVASLCEM LQRRGGAVSS SLLESDHFSK KRRVPKMDLF VDDCAAGEEQ KVFQFQGIGT 240 DAPAMPPVLP VTNGEAFDRV ELSLVSLEKL FQRANDACTA AEEMYSHGHG GTEPSTAICP 300 EEMNTAPMET GIDLQLPASL HPSSPNTGNA HLHLSTELTE SPGFVQSPEL PMAEIREDIH 360 VTRYPTQADV NSEIASSTDT SQDGTSETEA SHGPTNDVFW ERFLTETPRS CLDESERQES 420 PKDDVKAELG CNGFHHREKV DQITEQMGHL ASAEQTLHT*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MESSNLGGGG GGGGGGGPPP FLIKTYEMVE DAATNHVVSW GPGGASFVVW NPLDFSRDLL  60
PKYFKHNNFS SFIRQLNTYG FRKIDPERWE FANEDFIRGH THLLKNIHRR KPVHSHSLQN  120
QINGPLAESE RRELEEEINR LKYEKSILVA DLQRQNQQQY VINWQMQAME GRLVAMEQRQ  180
KNIVASLCEM LQRRGGAVSS SLLESDHFSK KRRVPKMDLF VDDCAAGEEQ KVFQFQGIGT  240
DAPAMPPVLP VTNGEAFDRV ELSLVSLEKL FQRANDACTA AEEMYSHGHG GTEPSTAICP  300
EEMNTAPMET GIDLQLPASL HPSSPNTGNA HLHLSTELTE SPGFVQSPEL PMAEIREDIH  360
VTRYPTQADV NSEIASSTDT SQDGTSETEA SHGPTNDVFW ERFLTETPRS CLDESERQES  420
PKDDVKAELG CNGFHHREKV DQITEQMGHL ASAEQTLHT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	4e-23	12	110	17	129	Heat shock factor protein 1
5d5v_B	4e-23	12	110	17	129	Heat shock factor protein 1
5d5v_D	4e-23	12	110	17	129	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.40018	0.0	callus\| flower\| leaf\| panicle\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	16580744	0.0
Expression Atlas	Q93VB5	-

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Hardly expressed in young leaves at 14 days after sowing (DAS). Expression detected in adult leaves at 28 DAS and increases with growing stage. {ECO:0000269\|PubMed:12032317}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os05g45410.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:12032317}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os05g45410

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB050096	0.0	AB050096.1 Oryza sativa Japonica Group Spl7 mRNA for heat stress transcription factor Spl7, complete cds.
GenBank	AK100412	0.0	AK100412.1 Oryza sativa Japonica Group cDNA clone:J023087K12, full insert sequence.
GenBank	AY344492	0.0	AY344492.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639851.1	0.0	heat stress transcription factor A-4d
Swissprot	Q93VB5	0.0	HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBL	A0A0E0HH41	0.0	A0A0E0HH41_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PQA9	0.0	A0A0E0PQA9_ORYRU; Uncharacterized protein
STRING	ORUFI05G25150.1	0.0	(Oryza rufipogon)
STRING	OS05T0530400-01	0.0	(Oryza sativa)
STRING	ONIVA05G24200.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3296	37	78
Representative plant	OGRP12863	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18880.1	2e-66	heat shock transcription factor A4A

Link Out ? help Back to Top
Phytozome	LOC_Os05g45410.1
Entrez Gene	4339409

Publications ? help Back to Top
Yamanouchi U,Yano M,Lin H,Ashikari M,Yamada K A rice spotted leaf gene, Spl7, encodes a heat stress transcription factor protein. Proc. Natl. Acad. Sci. U.S.A., 2002. 99(11): p. 7530-5 [PMID:12032317] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Baniwal SK, et al. Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors. J. Biosci., 2004. 29(4): p. 471-87 [PMID:15625403] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Kojo K, et al. Regulatory mechanisms of ROI generation are affected by rice spl mutations. Plant Cell Physiol., 2006. 47(8): p. 1035-44 [PMID:16816407] Tang T, et al. Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication. PLoS Genet., 2006. 2(11): p. e199 [PMID:17112320] Guo J, et al. Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis. J Genet Genomics, 2008. 35(2): p. 105-18 [PMID:18407058]