PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g45020.1 | ||||||||
Common Name | LOC4339379, OJ1593_C11.10, Os05g0525900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C3H | ||||||||
Protein Properties | Length: 256aa MW: 28257.9 Da PI: 5.2517 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.5 | 9.5e-08 | 101 | 126 | 3 | 26 |
S---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 3 telCrffartG...tCkyGdrCkFaHg 26 e+C++f+r C++G++C+FaHg LOC_Os05g45020.1 101 GEPCPDFRR-RpgaACPRGSTCPFAHG 126 689****99.558*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.324 | 98 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.041 | 98 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-6 | 99 | 130 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 102 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 28 | 136 | 159 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASREHLLLD PAALAVSWAD PAAVEIPPEL LAALGEYLSA RRSDGEAEAD AEAEADDEFM 60 MYEFKVRRCA RARSHDWTAC PYAHPGEAAR RRDPRRVAYT GEPCPDFRRR PGAACPRGST 120 CPFAHGTFEL WLHPSRYRTR PCRAGVACRR RVCFFAHTAG ELRAGSKEDS PLSLSPKSTL 180 ASLWESPPVS PVEGRRWVDG IDECDADAEM EELMFAMREL GLRKVRPSAS SVTPVLPPVT 240 DEDGPDFGWV SELVM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.87719 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993458 | 0.0 | ||||
Expression Atlas | Q65X92 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g45020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g45020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC109596 | 0.0 | AC109596.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1593_C11, complete sequence. | |||
GenBank | AK108249 | 0.0 | AK108249.1 Oryza sativa Japonica Group cDNA clone:002-140-H10, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | EU847521 | 0.0 | EU847521.1 Oryza sativa Japonica Group clone OsLS333 zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637897.1 | 0.0 | zinc finger CCCH domain-containing protein 37 | ||||
Swissprot | Q65X92 | 0.0 | C3H37_ORYSJ; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A0E0PQ67 | 0.0 | A0A0E0PQ67_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y6P7 | 0.0 | A2Y6P7_ORYSI; Uncharacterized protein | ||||
TrEMBL | B7F147 | 0.0 | B7F147_ORYSJ; Zinc finger protein | ||||
TrEMBL | I1PXG1 | 0.0 | I1PXG1_ORYGL; Uncharacterized protein | ||||
STRING | ORUFI05G24800.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0525900-01 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA05G0205900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11209 | 19 | 26 | Representative plant | OGRP12864 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g45020.1 |
Entrez Gene | 4339379 |
Publications ? help Back to Top | |||
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