PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g44400.1 | ||||||||
Common Name | LOC4339348, Os05g0520300, OSNPB_050520300, P0483D07.7, P0599F04.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GATA | ||||||||
Protein Properties | Length: 387aa MW: 39440.3 Da PI: 6.7726 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 9.2e-18 | 255 | 289 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l LOC_Os05g44400.1 255 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-18 | 249 | 299 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.479 | 249 | 285 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.5E-15 | 250 | 286 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.57E-15 | 251 | 312 | No hit | No description |
CDD | cd00202 | 4.51E-14 | 254 | 301 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 255 | 289 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 255 | 280 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MEVAAADYAG GVRVKKEAGG CGGSGDMFLV DDLLDLPCDE EEEETGLCGA YGGGGAGLGA 60 GVVGGGGDDR AAGNASADSS TVTAVDSCSN SFSGLADGDF SGGLCEPYEQ LAELEWVSTY 120 MGEETLPTED LRKLQLISGI PAAPRAPPAL AVSAVQLPAG GAGALPTEAP VPGKARSKRS 180 RVAPCSWSSR LMVLPPPPAS PPSPASAVIS PSESGTAAPA FPAKKAAKSA KKKDGPSPAP 240 APNAAAQAAA EGRRCLHCET DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT 300 FVVSKHSNSH RKVVELRRQK EMQLLHHHQQ PPPHVGAGGG GAAGGLLHVT SPLLFDGPTS 360 SAPLFAGADE FLIHNRISPD YRRQAT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.75987 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116631309 | 0.0 | ||||
Expression Atlas | Q6F2Z7 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g44400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g44400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT837664 | 0.0 | CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638019.1 | 0.0 | GATA transcription factor 12 | ||||
TrEMBL | A0A0E0ITL2 | 0.0 | A0A0E0ITL2_ORYNI; GATA transcription factor | ||||
TrEMBL | A2Y6M0 | 0.0 | A2Y6M0_ORYSI; GATA transcription factor | ||||
TrEMBL | Q6F2Z7 | 0.0 | Q6F2Z7_ORYSJ; GATA transcription factor | ||||
STRING | OS05T0520300-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA10G13440.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-46 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g44400.1 |
Entrez Gene | 4339348 |