PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g43960.1
Common NameOsJ_19198
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 495aa    MW: 54052.8 Da    PI: 6.5105
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g43960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.31.1e-26201573128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWk.at 86 
                       +GfrF+P++ e v +yL ++++g++   + +i   ++y++eP++L  +      + ++e+ wyf s+rd+ky++gkr++r+t+  +g+Wk +t
  LOC_Os05g43960.1  20 MGFRFKPREAEAVEYYLLPRLQGRPPVPNPAIVVENVYEFEPERLInEkcnggVAGEGEEGWYFLSPRDRKYRNGKRPSRSTEdkAGRWKaST 112
                       7************************7666779999**********733566654445788********************887679****546 PP

               NAM  87 gk...dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       gk   + ++++  g ++ + ++Lv++kg  ++ +kt+W+m e+++
  LOC_Os05g43960.1 113 GKtegKDPITECYGWVKFCVTSLVYFKGPVKTEKKTKWLMREFTI 157
                       664435678777888999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.02818190IPR003441NAC domain
SuperFamilySSF1019411.31E-2919190IPR003441NAC domain
PfamPF023657.6E-1520156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAGLGKGESS GGGGGGGGEM GFRFKPREAE AVEYYLLPRL QGRPPVPNPA IVVENVYEFE  60
PERLINEKCN GGVAGEGEEG WYFLSPRDRK YRNGKRPSRS TEDKAGRWKA STGKTEGKDP  120
ITECYGWVKF CVTSLVYFKG PVKTEKKTKW LMREFTIPHF ENKLDKTAAA GGSSNQRQLD  180
QYVLCRIYTS PKKGADDGEQ AEVVRGGGGG GEDIDEWAEA CAVFDLGPET AEGSDNADAA  240
AAEGDMRSAK QAGKRPVAAA AVAEQPSKRP WLPPSPSTPC DGGPSQAMGN RQVPMQGLSL  300
MHNFPPPPTT FCGHAPFQQG FPVHNNRAQM RWPTMQHNCM PSPAHSFQPR PVQRRPVLVG  360
QAPPQRRPVH HVGGHAPMHM HQAQWTPVHI AQAPMQQLPF DDWVFDPFDD PPPPMQQLPV  420
MMNNYQPQAP MQLPPMMNND QPAMVHGGEL QAPMQLLPAT THGGEVQAPM PLNVYEEEQR  480
PSQEDGGQCT NAEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-162118820163NO APICAL MERISTEM PROTEIN
1ut4_B2e-162118820163NO APICAL MERISTEM PROTEIN
1ut7_A2e-162118820163NO APICAL MERISTEM PROTEIN
1ut7_B2e-162118820163NO APICAL MERISTEM PROTEIN
4dul_A2e-162118820163NAC domain-containing protein 19
4dul_B2e-162118820163NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FGS4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g43960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g43960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306030.0AC130603.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1130G10, complete sequence.
GenBankAC1324850.0AC132485.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0022D06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881431.11e-180pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBLB9FGS40.0B9FGS4_ORYSJ; Uncharacterized protein
STRINGORUFI05G24130.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Representative plantOGRP1463834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.24e-21NAC domain containing protein 35