PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g43950.1 | ||||||||
Common Name | LOC4339316, Os05g0515700, OSNPB_050515700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | VOZ | ||||||||
Protein Properties | Length: 642aa MW: 69902.1 Da PI: 5.4343 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 420.1 | 3.6e-129 | 308 | 525 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 p+ps++lgpkcalwdc rp++gs+++q+yc+ +ha laln+ gl+gt+pv+rp+gidlkdg+lfaalsakvqgk+vgip+cegaat+kspwna LOC_Os05g43950.1 308 PSPSQYLGPKCALWDCGRPVRGSDECQHYCNPYHAGLALNDdGLLGTRPVMRPRGIDLKDGPLFAALSAKVQGKNVGIPVCEGAATTKSPWNA 400 89**************************************9799************************************************* PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 +elfdlsllege++rewlffd+prraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eye+n++dalalyrl LOC_Os05g43950.1 401 PELFDLSLLEGESLREWLFFDTPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYETNDSDALALYRL 493 ********************************************************************************************* PP VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217 e+k++d+k+s+k+k+++++l+++q++++rl+a LOC_Os05g43950.1 494 EYKSSDTKRSVKSKLASSPLSEIQQQMVRLSA 525 ******************************97 PP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MAGDPAAGGD GGRGSSGGKG SSPSSSRHQQ FRNLAKTRVD DLQEMFSGLQ SARKESRSAD 60 AALLEEQVHH MLREWRAELN VPSPASSLQN SQSQGNNREA SDPPSETLRL LQLAGAEEED 120 DATSKLVMPR SPMPMQSSHE GHNLSPVLQG GTMAGGAAEL MVPRSPLQQM PSSHQSHGHG 180 QDGGQNLQGE AVMGSTAATA APHLGQGMQG DCGGMAGVTN AMFHDQLYYI DHELNIDDFL 240 QDDDYKINLP GSNPDGPNTM QGIGQLEHQQ YNLPLDLPPN SFVDANNSAQ SSGDVFFHMS 300 DLLTTMCPSP SQYLGPKCAL WDCGRPVRGS DECQHYCNPY HAGLALNDDG LLGTRPVMRP 360 RGIDLKDGPL FAALSAKVQG KNVGIPVCEG AATTKSPWNA PELFDLSLLE GESLREWLFF 420 DTPRRAFDSG NRKQRSLPDY NGRGWHESRK QVMKDFGGLK RSYYMDPQPS SNYEWHLFEY 480 ETNDSDALAL YRLEYKSSDT KRSVKSKLAS SPLSEIQQQM VRLSADSPVE SKRTARSRAK 540 ANQKDNNSNA YPALNTPVQV SASNAHQTMS VNTPDQVNVS NAYQTMPLNT PNQPGPSNAY 600 HAASQMDQMT FLDGSVVYGP HLPYGYSTER SDFYWNPSDG T* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27201 | 0.0 | callus| flower| leaf| panicle| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979100 | 0.0 | ||||
Expression Atlas | Q0DGR8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g43950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g43950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069076 | 0.0 | AK069076.1 Oryza sativa Japonica Group cDNA clone:J023004H20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640409.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-114 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | Q0DGR8 | 0.0 | Q0DGR8_ORYSJ; Os05g0515700 protein | ||||
STRING | OS05T0515700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-111 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g43950.1 |
Entrez Gene | 4339316 |
Publications ? help Back to Top | |||
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