PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g43760.1 | ||||||||
Common Name | B1155G07.11, LOC4339298, Os05g0513100, OSNPB_050513100, TCP11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TCP | ||||||||
Protein Properties | Length: 295aa MW: 30475.6 Da PI: 7.7587 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 97.5 | 2.4e-30 | 54 | 158 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....... 88 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ +++ + +a++s ++ LOC_Os05g43760.1 54 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPH----DHDLVAAAASSMAPppfangg 142 78*************************************************************99999....222222222111112222333 PP TCP 89 ...............k 89 + LOC_Os05g43760.1 143 dghhgasassmledgD 158 4444333333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.959 | 55 | 113 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.3E-26 | 55 | 117 | IPR005333 | Transcription factor, TCP |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MTSNNSTNEE LGGGGRKAAD KPSGGGGAAA AVASSRHWSA STESRIVRVS RVFGGKDRHS 60 KVRTVKGLRD RRVRLSVPTA IQLYDLQDRL GLSQPSKVVD WLINAAQAEI DKLPPLQFPP 120 HDHDLVAAAA SSMAPPPFAN GGDGHHGASA SSMLEDGDKA AGGGGMKAFM SLSNSLGLLN 180 AATMPATLAA HHHHHHHAAA YYAAAESWGN GGNGGHHHDV SHGVSPSAHN SPFPSLLSLA 240 PGSHHQFVFY SPEGGGFAVK EAAAEQFPVD SLDHSQGQLT LSSARSFLHS GSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 60 | 114 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5286 | 0.0 | flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32979962 | 0.0 | ||||
Expression Atlas | Q5TKH1 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g43760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g43760 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC130604 | 0.0 | AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence. | |||
GenBank | AK069938 | 0.0 | AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | GQ229484 | 0.0 | GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637968.1 | 0.0 | transcription factor TCP13 | ||||
TrEMBL | A0A0E0PPW1 | 0.0 | A0A0E0PPW1_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5TKH1 | 0.0 | Q5TKH1_ORYSJ; Os05g0513100 protein | ||||
STRING | ORUFI05G23910.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0513100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 9e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g43760.1 |
Entrez Gene | 4339298 |