PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g43380.1 | ||||||||
Common Name | LOC4339273, Os05g0509400, OSJNBb0108E17.15, OSNPB_050509400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 375aa MW: 41412.1 Da PI: 8.1482 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.9 | 4.8e-14 | 85 | 122 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk LOC_Os05g43380.1 85 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKA 122 89**********************************85 PP | |||||||
2 | TCR | 50 | 6e-16 | 170 | 206 | 3 | 39 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++gCnCkks+ClkkYC+C+++g+ Cs C+CedC+N LOC_Os05g43380.1 170 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCRNP 206 589********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.1E-12 | 83 | 124 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 30.303 | 84 | 208 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.5E-10 | 86 | 121 | IPR005172 | CRC domain |
SMART | SM01114 | 1.7E-15 | 168 | 209 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.6E-11 | 171 | 205 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009072 | anatomy | plant ovary | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MEATPISVKP PSPVAAAPPP PPVQVPVPPP PPPPLPPAAA AVEPLPPQPV AVVVAEAEPC 60 SMNQLALTPT PKRQKVEESA DGNGCKHCAC KKSRCLKLYC PCFAGGGYCS EKCGCQPCFN 120 KALYAETVQT TRKVLLSRQK RMSLKINRRS EANAEAVEDA HHSSSSTPPR RGCNCKKSSC 180 LKKYCDCYQD GTGCSLFCRC EDCRNPFGKN EGIMAEESKR FLYTGADLDH SEDEQDFIVE 240 RSPRLQSPIS KESSFQQTPP HIRATNRDTH MFPQAISQWQ PRSWHCSKRQ SNDRVIDDSG 300 EYKNSNHDWQ LAKPEDSYSI SRCVQILNGM AELSQVEKSV APDVFLQAGN REIFISLNGD 360 VRALWLKRKI QNLT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-12 | 88 | 205 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 7e-12 | 88 | 205 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23126 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32993262 | 0.0 | ||||
Expression Atlas | Q6L4W5 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g43380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g43380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108053 | 0.0 | AK108053.1 Oryza sativa Japonica Group cDNA clone:002-137-H05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640211.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | B8AZT2 | 0.0 | B8AZT2_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q6L4W5 | 0.0 | Q6L4W5_ORYSJ; Os05g0509400 protein | ||||
STRING | OS05T0509400-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10159 | 29 | 37 | Representative plant | OGRP12002 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 2e-45 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g43380.1 |
Entrez Gene | 4339273 |