PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g42130.1 | ||||||||
Common Name | LOC4339232, OJ1057_B02.15, Os05g0500600, OSJNBa0017K09.1, OSNPB_050500600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 426aa MW: 45430.8 Da PI: 6.1368 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 258.3 | 2.7e-79 | 37 | 423 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely..kalppsetsekn...sseelaalkl..fsev 87 ++lLl+cA a++s+d +laq++++ l+++as++gdp qRl++ +++AL ar r + +a++ e + +++++++l ++++ LOC_Os05g42130.1 37 QQLLLHCAAALESNDVTLAQQAMWVLNNIASSQGDPSQRLTSWLLRALVARACRLCAAAPagAAVEFLERG--RappWGRAMSVTELadYVDL 127 699***************************************************44443300333333333..2356555555566688**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177 +P+++f++ + N aIl+av+g+++vH++D+++++++QWp+L++ L++Rp+g+p +RiT+ + ++ + + +e+g rLa fA++ gv++e LOC_Os05g42130.1 128 TPWHRFGFTASNAAILRAVAGASAVHVVDLSVTHCMQWPTLIDVLSKRPGGAPAIRITVPSVRPAVpplLAVSSSELGARLAIFAKSKGVQLE 220 **********************************************************9887555578889999******************* PP GRAS 178 fnvl..............vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 fnv+ ++++l+++ ++ +L ++ gEa++Vn++ l ++ +++rd +L++v+ l+P +++v++++ad++s+s++ LOC_Os05g42130.1 221 FNVVesatttspkktsttLCQELASVlsDPPSLGLRDGEAVVVNCQSWLRHVA------PDTRDLFLDTVRALNPCLLTVTDEDADLGSPSLA 307 ****998888776655443344443367888889999************9998......66789***************************** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 r++ ++++++ l+d+l++++p++s r E++ +gr+i++v+ e + er e ++ er+++ GF v ++e+aa+++++ll++++ LOC_Os05g42130.1 308 SRMAGCFDFHWILLDALDMSAPKDSPRRLEQEAA-VGRKIESVIGEEDGA--ERSEPGARLAERMSRKGFAGVVFDEEAAAEVRRLLSEHA-T 396 ****************************999999.**********99988..9**************************************.9 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 g+ v+ e++ lvl+Wk+++ v++ aW+ LOC_Os05g42130.1 397 GWGVKREDDMLVLTWKGHAAVFTGAWT 423 9*************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.709 | 10 | 404 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.3E-77 | 37 | 423 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MDMEHELRGG GVGAAAHGHG SICFSGGPVL VDGRRIQQLL LHCAAALESN DVTLAQQAMW 60 VLNNIASSQG DPSQRLTSWL LRALVARACR LCAAAPAGAA VEFLERGRAP PWGRAMSVTE 120 LADYVDLTPW HRFGFTASNA AILRAVAGAS AVHVVDLSVT HCMQWPTLID VLSKRPGGAP 180 AIRITVPSVR PAVPPLLAVS SSELGARLAI FAKSKGVQLE FNVVESATTT SPKKTSTTLC 240 QELASVLSDP PSLGLRDGEA VVVNCQSWLR HVAPDTRDLF LDTVRALNPC LLTVTDEDAD 300 LGSPSLASRM AGCFDFHWIL LDALDMSAPK DSPRRLEQEA AVGRKIESVI GEEDGAERSE 360 PGARLAERMS RKGFAGVVFD EEAAAEVRRL LSEHATGWGV KREDDMLVLT WKGHAAVFTG 420 AWTPN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 4e-44 | 39 | 424 | 36 | 420 | Protein SHORT-ROOT |
5b3h_E | 4e-44 | 39 | 424 | 36 | 420 | Protein SHORT-ROOT |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.53020 | 0.0 | flower| leaf |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980513 | 0.0 | ||||
Expression Atlas | Q6AUW2 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g42130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g42130 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC113332 | 0.0 | AC113332.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1057_B02, complete sequence. | |||
GenBank | AC130597 | 0.0 | AC130597.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017K09, complete sequence. | |||
GenBank | AK070489 | 0.0 | AK070489.1 Oryza sativa Japonica Group cDNA clone:J023050L12, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638716.1 | 0.0 | scarecrow-like protein 32 | ||||
TrEMBL | Q6AUW2 | 0.0 | Q6AUW2_ORYSJ; Os05g0500600 protein | ||||
STRING | OS05T0500600-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12227 | 32 | 38 | Representative plant | OGRP2499 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 7e-96 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g42130.1 |
Entrez Gene | 4339232 |