PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g41780.1 | ||||||||
Common Name | LOC4339209, OJ1118_C04.10, Os05g0497300, OSNPB_050497300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 237aa MW: 24113.3 Da PI: 9.3484 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.3 | 2.6e-20 | 37 | 87 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr ++ +gr++AeIrdp k+ r++lg+f+taeeAa+a++aa+++++g+ LOC_Os05g41780.1 37 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 87 69*******.**********83...36**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.67E-18 | 36 | 95 | No hit | No description |
Pfam | PF00847 | 1.4E-13 | 37 | 86 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.868 | 37 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-22 | 37 | 95 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.1E-35 | 37 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 38 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 60 | 76 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MAPRTSDKTM SPAAAATGLA LGVGGVAGAA AVGTGQHFRG VRKRPWGRYA AEIRDPAKKS 60 RVWLGTFDTA EEAARAYDAA AREYRGAKAK TNFPYPNGAP AAGVNSGSSN SSTVESFGSD 120 VQAPMKAMPI PPSLELDLFH RAAAAAAAGA GGMRFPFEGY PVSHPYYFFG QAAAAAAASG 180 CRMLKIAPAP VTVAALAQSD SDSSSIVDLA PSPPAALAKK AIAFDLDLNC PPPMEV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 35 | 108 | 3 | 70 | ATERF1 |
3gcc_A | 3e-22 | 35 | 108 | 3 | 70 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23103 | 0.0 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q75K82 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g41780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g41780 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108523 | 0.0 | AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence. | |||
GenBank | AK111755 | 0.0 | AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT832482 | 0.0 | CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637538.1 | 1e-168 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A0D3G9E0 | 1e-167 | A0A0D3G9E0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0A161 | 1e-167 | A0A0E0A161_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0DTI1 | 1e-167 | A0A0E0DTI1_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PPG3 | 1e-167 | A0A0E0PPG3_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y646 | 1e-167 | A2Y646_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PWX8 | 1e-167 | I1PWX8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q6J832 | 1e-167 | Q6J832_ORYSA; Ethylene-responsive element binding factor | ||||
TrEMBL | Q75K82 | 1e-167 | Q75K82_ORYSJ; Os05g0497300 protein | ||||
STRING | OGLUM05G22790.1 | 1e-167 | (Oryza glumipatula) | ||||
STRING | OMERI05G18600.1 | 1e-167 | (Oryza meridionalis) | ||||
STRING | ORUFI05G22850.1 | 1e-167 | (Oryza rufipogon) | ||||
STRING | OS05T0497300-01 | 1e-167 | (Oryza sativa) | ||||
STRING | ORGLA05G0187600.1 | 1e-167 | (Oryza glaberrima) | ||||
STRING | OBART05G21580.1 | 1e-167 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3846 | 31 | 74 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-20 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g41780.1 |
Entrez Gene | 4339209 |