PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g41540.1 | ||||||||
Common Name | LOC4339196, OJ1579_G03.9, Os05g0495200, OsJ_17245, OSNPB_050495200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 225aa MW: 24584.8 Da PI: 5.9801 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.4 | 2.4e-11 | 68 | 117 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++l ++rr NReA r++R++Kka + Lee+vk+L a N++L k+l+ LOC_Os05g41540.1 68 EDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQG 117 67899****************************************99975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-15 | 67 | 135 | No hit | No description |
SMART | SM00338 | 8.9E-12 | 67 | 134 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.002 | 69 | 116 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.3E-13 | 69 | 124 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14686 | 5.10E-13 | 72 | 125 | No hit | No description |
SuperFamily | SSF57959 | 4.25E-8 | 72 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDDVPSQLLF SHPEVPDSFD DFLNNITTCT HTHTCNPPGP SATMHTHTCL HTHTQVFASG 60 SGEDDIKEDL TKTRRPLGNR EAVRKYREKK KAHAAFLEEE VKKLRAANQQ LLKRLQGHAA 120 LEAEVIRLRS ILLDVRGKID MEIGTFPYQK PCSVGSVACT DPGMCFNGNS EIGGVWEECS 180 RPVGADRMID KDGSMSQEID IPGPVHSISM DVVGSLVTSA SLSE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26821 | 0.0 | callus| flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982304 | 0.0 | ||||
Expression Atlas | Q65X73 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g41540.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g41540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC112160 | 0.0 | AC112160.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1579_G03, complete sequence. | |||
GenBank | AK072281 | 0.0 | AK072281.1 Oryza sativa Japonica Group cDNA clone:J023018E07, full insert sequence. | |||
GenBank | AK104986 | 0.0 | AK104986.1 Oryza sativa Japonica Group cDNA clone:002-110-E11, full insert sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638714.1 | 1e-168 | basic leucine zipper 23 | ||||
Refseq | XP_025881179.1 | 1e-168 | basic leucine zipper 23 | ||||
Refseq | XP_025881180.1 | 1e-168 | basic leucine zipper 23 | ||||
Refseq | XP_025881181.1 | 1e-168 | basic leucine zipper 23 | ||||
Refseq | XP_025881182.1 | 1e-168 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 5e-56 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A0D3G9C5 | 1e-167 | A0A0D3G9C5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0PPE3 | 1e-167 | A0A0E0PPE3_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1PWW4 | 1e-167 | I1PWW4_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q65X73 | 1e-167 | Q65X73_ORYSJ; Os05g0495200 protein | ||||
STRING | ORUFI05G22690.1 | 1e-168 | (Oryza rufipogon) | ||||
STRING | OS05T0495200-01 | 1e-168 | (Oryza sativa) | ||||
STRING | ORGLA05G0186200.1 | 1e-168 | (Oryza glaberrima) | ||||
STRING | OBART05G21450.1 | 1e-168 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 5e-40 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g41540.1 |
Entrez Gene | 4339196 |
Publications ? help Back to Top | |||
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