PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g41540.1
Common NameLOC4339196, OJ1579_G03.9, Os05g0495200, OsJ_17245, OSNPB_050495200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 225aa    MW: 24584.8 Da    PI: 5.9801
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g41540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-1168117251
                       XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                       ++l ++rr   NReA r++R++Kka  + Lee+vk+L a N++L k+l+ 
  LOC_Os05g41540.1  68 EDLTKTRRPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLKRLQG 117
                       67899****************************************99975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-1567135No hitNo description
SMARTSM003388.9E-1267134IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.00269116IPR004827Basic-leucine zipper domain
PfamPF077161.3E-1369124IPR004827Basic-leucine zipper domain
CDDcd146865.10E-1372125No hitNo description
SuperFamilySSF579594.25E-872117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDDVPSQLLF SHPEVPDSFD DFLNNITTCT HTHTCNPPGP SATMHTHTCL HTHTQVFASG  60
SGEDDIKEDL TKTRRPLGNR EAVRKYREKK KAHAAFLEEE VKKLRAANQQ LLKRLQGHAA  120
LEAEVIRLRS ILLDVRGKID MEIGTFPYQK PCSVGSVACT DPGMCFNGNS EIGGVWEECS  180
RPVGADRMID KDGSMSQEID IPGPVHSISM DVVGSLVTSA SLSE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.268210.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329823040.0
Expression AtlasQ65X73-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g41540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g41540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1121600.0AC112160.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1579_G03, complete sequence.
GenBankAK0722810.0AK072281.1 Oryza sativa Japonica Group cDNA clone:J023018E07, full insert sequence.
GenBankAK1049860.0AK104986.1 Oryza sativa Japonica Group cDNA clone:002-110-E11, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638714.11e-168basic leucine zipper 23
RefseqXP_025881179.11e-168basic leucine zipper 23
RefseqXP_025881180.11e-168basic leucine zipper 23
RefseqXP_025881181.11e-168basic leucine zipper 23
RefseqXP_025881182.11e-168basic leucine zipper 23
SwissprotQ8GTS25e-56BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A0D3G9C51e-167A0A0D3G9C5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PPE31e-167A0A0E0PPE3_ORYRU; Uncharacterized protein
TrEMBLI1PWW41e-167I1PWW4_ORYGL; Uncharacterized protein
TrEMBLQ65X731e-167Q65X73_ORYSJ; Os05g0495200 protein
STRINGORUFI05G22690.11e-168(Oryza rufipogon)
STRINGOS05T0495200-011e-168(Oryza sativa)
STRINGORGLA05G0186200.11e-168(Oryza glaberrima)
STRINGOBART05G21450.11e-168(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38313675
Representative plantOGRP19701536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.15e-40bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]