PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g41450.1 | ||||||||
Common Name | LOC4339189, OJ1579_G03.2, Os05g0494100, OsDrAp2, OsJ_19042, OSNPB_050494100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 291aa MW: 32214.9 Da PI: 4.8932 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 62.5 | 8.6e-20 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +tl s +++++ + +++dfl d+v + LOC_Os05g41450.1 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTLSSSHLKQCIHSYNVYDFLRDVVSK 86 5789**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.5E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.56E-20 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-18 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001015 | developmental stage | K second mitotic division stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK 60 TLSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR 120 NEAASQTSTG RGRGRGRGRG RRGGRVSERE IISAYEKFEE NHEFPPGQFS KPSQLKVDVS 180 VDGTDAIETK EATPLSNARA SLRNIDLNIE LTDYDDEGSA PLEVQPPAPA AGVVTTSSGP 240 LVSEVNEEAK TKDFLGWQLP ELTKMAMDPV QFALSSNHRL EEDEDYDNEE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 6e-23 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 139 | RGRGRGRGRG |
2 | 130 | 140 | RGRGRGRGRGR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51018 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32978338 | 0.0 | ||||
Expression Atlas | Q65X80 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g41450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g41450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288048 | 0.0 | AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds. | |||
GenBank | AK068320 | 0.0 | AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639312.1 | 0.0 | dr1-associated corepressor | ||||
TrEMBL | A0A0E0HGA6 | 0.0 | A0A0E0HGA6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0PPD4 | 0.0 | A0A0E0PPD4_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2Y627 | 0.0 | A2Y627_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q65X80 | 0.0 | Q65X80_ORYSJ; Os05g0494100 protein | ||||
STRING | ORUFI05G22600.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0494100-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA05G22040.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 | Representative plant | OGRP2179 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 7e-55 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g41450.1 |
Entrez Gene | 4339189 |
Publications ? help Back to Top | |||
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