PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os05g40680.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 455aa MW: 50952 Da PI: 4.8547

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os05g40680.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.8	3.6e-13	393	442	1	47
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 +f+n+YA +GFs+++++++++ krnge+t+ tf+C+++gk+++++k+ LOC_Os05g40680.1 393 EFFNFYALLAGFSIVRAHNYHTtskKRNGEVTRVTFRCNRQGKPTSQSKS 442 6*****************998999*****************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-11	393	442	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT SEQKVEIHTK ETQNLANTKK 60 KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK 120 HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYETT 180 FVNSGITGNE VGISNALDEP NTDHIGLGAE DATVEKQSMD NSASVTEAFV DYSNKYSYDE 240 LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS TFVASPSAFQ EDESNEEDAM 300 DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELT EEDINIFVEN 360 EQEEATKGNN AAIDSRYIPR VGTQFKTITK AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN 420 GEVTRVTFRC NRQGKPTSQS KSRGMRFGIF QGYN*

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT SEQKVEIHTK ETQNLANTKK  60
KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK  120
HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYETT  180
FVNSGITGNE VGISNALDEP NTDHIGLGAE DATVEKQSMD NSASVTEAFV DYSNKYSYDE  240
LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS TFVASPSAFQ EDESNEEDAM  300
DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELT EEDINIFVEN  360
EQEEATKGNN AAIDSRYIPR VGTQFKTITK AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN  420
GEVTRVTFRC NRQGKPTSQS KSRGMRFGIF QGYN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os05g40680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os05g40680

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC118289	0.0	AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q8H3L3	0.0	Q8H3L3_ORYSJ; Putative far-red impaired response protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP30	12	351

Link Out ? help Back to Top
Phytozome	LOC_Os05g40680.1