PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g40080.1
Common NameLOC107277720, OsJ_18935
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 329aa    MW: 34719.6 Da    PI: 4.6471
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g40080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY703.3e-22125191159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS...STT..EEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae...dpk..vveitYegeHnhe 59 
                       +dD++ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s++   d+   v +itY geH+++
  LOC_Os05g40080.1 125 MDDKFLWRKYGQKEIKNSKHPRFYYRCSYKddhGCTATKQVQQSETaddDTAspVYIITYFGEHTCR 191
                       58***************************99999*******9986421133233789*******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081116.96120170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-23121191IPR003657WRKY domain
SuperFamilySSF1182907.19E-22122191IPR003657WRKY domain
SMARTSM007748.4E-33125192IPR003657WRKY domain
PfamPF031069.1E-24126191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALTMVSLAA IAGKPTAASA QLVAEGRESA ARLYALLVGS SALHGPVGLA EQILLCFDRA  60
LAKLHGVNLA GAEDDDDAAG NGNGRKRKPG RGRGLTAASA AASSKRMRVS NAGGNGARIE  120
RKATMDDKFL WRKYGQKEIK NSKHPRFYYR CSYKDDHGCT ATKQVQQSET ADDDTASPVY  180
IITYFGEHTC RHGDDAAAMV VDGGEEEDQL SPAQMVISFA SSNGGDASVS WPCSGDDAQN  240
NSETSHESSP PEAPAGEEER LRPCTAAGVS DEPIMESTPP APELLADLKP MDGCLLDGES  300
LFGMDELVYF HELSAALGLL DRDWGAPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21125191869OsWRKY45
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasB9FJS3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g40080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g40080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447370.0AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639266.10.0probable WRKY transcription factor 38
TrEMBLA0A0E0HG180.0A0A0E0HG18_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PNZ80.0A0A0E0PNZ8_ORYRU; Uncharacterized protein
TrEMBLB9FJS30.0B9FJS3_ORYSJ; Uncharacterized protein
TrEMBLQ6IEM70.0Q6IEM7_ORYSI; WRKY transcription factor 54
STRINGORUFI05G21600.10.0(Oryza rufipogon)
STRINGONIVA05G21460.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-20WRKY DNA-binding protein 38