PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g40070.1
Common NameLOC107276131, Os05g0478700, OSNPB_050478700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 281aa    MW: 31320.6 Da    PI: 6.5231
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g40070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.54.9e-17136197259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                       +Dg++WrKYG K++ +sef + YYrC ++   +C++kk v++++ + p  + +t ++eH+++
  LOC_Os05g40070.1 136 NDGFHWRKYGEKNILNSEFRKLYYRCGYSderKCQAKKYVQQENnKHPPEFRVTLTNEHTCN 197
                       7**************************998899*******98761578899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.44E-18129197IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.5E-19130197IPR003657WRKY domain
SMARTSM007741.2E-26135198IPR003657WRKY domain
PfamPF031068.8E-20136196IPR003657WRKY domain
PROSITE profilePS5081112.656136199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MARRLPKSER SPSPPPPPPG DQRDAAIQEL SKGSELATQL MAQLELIPER ELDGRRDDAL  60
ANVRSLSMSL SSSLYALRSE RREHYYCGSS SSSGGAGPAA VTSVSGAGGE RKTKRRRGKH  120
GEELIETVFI TTTPENDGFH WRKYGEKNIL NSEFRKLYYR CGYSDERKCQ AKKYVQQENN  180
KHPPEFRVTL TNEHTCNTVF QDQPSSSSTN SQVLDFTKAS ISSSLMDSHV GAPILKEEEE  240
EEVPSIDEST RIMSTIMRNY GSYGDYDESS PQPWNGAGWK *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0WNY3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g40070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g40070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.10.0probable WRKY transcription factor 63
TrEMBLA0A0P0WNY30.0A0A0P0WNY3_ORYSJ; Os05g0478700 protein
STRINGOS05T0478700-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Representative plantOGRP1427144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66560.12e-14WRKY DNA-binding protein 64