PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g40060.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 332aa    MW: 34901.2 Da    PI: 4.3811
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g40060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.52.1e-26127187259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg+ WrKYGqKe+k+s++pr YYrC+++   gC+++k+v++s+edp++ +itY g+H+++
  LOC_Os05g40060.1 127 EDGFLWRKYGQKEIKNSKHPRLYYRCSYKddhGCTATKQVQQSEEDPSLYVITYFGDHTCS 187
                       7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.138121189IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-27121187IPR003657WRKY domain
SuperFamilySSF1182902.88E-25122188IPR003657WRKY domain
SMARTSM007741.0E-39126188IPR003657WRKY domain
PfamPF031064.0E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MALIATGATA TATAAPVASP AASSMASELM AQGRESAAVL EALLHGASLP PAHGGAHALA  60
AEILRCCDRA LAALRAGGDA ESSSADTKRK PATAQPSTRR RRRATASGGG AAAAAEPARV  120
EKARTSEDGF LWRKYGQKEI KNSKHPRLYY RCSYKDDHGC TATKQVQQSE EDPSLYVITY  180
FGDHTCSCQT AAAAAMDDDD DDENSQHFVI NFGPATASRS GSPPLLYDDG DDGDVWRETA  240
ATPPSSRQSR CSPEGDGEES GVKMSKEEPV DSCPGPSAVS SPADVVSCSS PAMEPDLLGC  300
LNWDDDFGDS SFVDADEFMN FDEIDLFQIY S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21127186968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
187102KRKPATAQPSTRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00070PBMTransfer from AT5G01900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g40060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g40060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447370.0AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638904.10.0probable WRKY transcription factor 70
TrEMBLQ6IEN30.0Q6IEN3_ORYSI; WRKY transcription factor 48
STRINGOMERI05G17240.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-21WRKY DNA-binding protein 70