PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g39790.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 711aa    MW: 81710.8 Da    PI: 8.3003
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g39790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.51.9e-2253144190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn+YA + GFs+r+s+ ++  +++ i++ tf+Cs++g+r  +k++       + +++etr++C+a++k+++  dg + +++++ eHnH+la
  LOC_Os05g39790.1  53 DFYNAYALKKGFSIRRSSYHYIGNTKIIKNMTFCCSRQGSRGIDKRAeasGYGDSFSKPETRCKCQACMKISLI-DGFYSIYHFVPEHNHNLA 144
                       6****************************************9999984433445569*****************.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1753144IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.52442489IPR007527Zinc finger, SWIM-type
PfamPF044344.1E-5463486IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-6464491IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MMNSRFLNQC HHNCRIQEHA DEGTNEAAHT TKYLEDLVPK IGMKFSSEQE AYDFYNAYAL  60
KKGFSIRRSS YHYIGNTKII KNMTFCCSRQ GSRGIDKRAE ASGYGDSFSK PETRCKCQAC  120
MKISLIDGFY SIYHFVPEHN HNLATRSQAH QLRSQRKINE AQVASIEVAK SIGISTKAAI  180
DLMAKQACGF ENLGFTRVDI KNKLYSKRSL QTKQGDTGGV LEYMEKKASE DVKFFYSIQV  240
DEDDLITNIF WADSKMVADY EDFGDVNACK HLAGCVKDYK KFNADFQNCI YDQEEEEEFL  300
RAWGQLLEKY KLQQNTWLQR IFKKREQWAL VYGRNTFSAD MSTTQRNESL NNELKGYISV  360
KYDMLTFFEH FDRLVGDKRY EEVKCDFRAT QSTPKLKAEL RILRYVAEVY TPAVYKIFEE  420
EVMQTLNCDI FYCGEVDVEK VYKIKANGKH LEHVVRYSPL ESNVKCSCKK FEFAGILCSH  480
ALKILDVNNI KSVPQQYILK RWTIDAKVLH ISGNSNMHDD PRIKISDRYS SLCRMFVRIA  540
STAAKSEETY SMSTNCAEKL AEDIEKFLRI RSDPDLDKSP SPQVGKENQM PKKPRGIKLK  600
EKGIHGSARR VGGLEKASSQ RKRKKKDDDV PDHVLEPQPE MQSQPPATVM GHLEVPSNQT  660
FLHVSQYYAA LEASTHPLFH TPISVTPESQ GLHQGRPFQQ FDTDFHNMFP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1620624RKRKK
2620626RKRKKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g39790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g39790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447430.0AC144743.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0009H09, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.11e-176protein FAR1-RELATED SEQUENCE 5-like
TrEMBLC7J2F70.0C7J2F7_ORYSJ; Os05g0475600 protein
STRINGPavir.J09168.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19990.15e-48FAR1-related sequence 1