PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g39720.1
Common NameLOC4339092, Os05g0474800, OSNPB_050474800, P0486C01.14
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 573aa    MW: 59652.3 Da    PI: 5.5018
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g39720.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32219276260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkve+s  d++v+ei+Y+g H h+k
  LOC_Os05g39720.1 219 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVEQSP-DGQVTEIVYKGAHSHPK 276
                       8****************************************.***************85 PP
2WRKY106.51.4e-33391449159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  LOC_Os05g39720.1 391 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASNDLRAVITTYEGKHNHD 449
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.6E-28214277IPR003657WRKY domain
SuperFamilySSF1182901.7E-24216277IPR003657WRKY domain
SMARTSM007744.6E-35218276IPR003657WRKY domain
PfamPF031068.0E-25219275IPR003657WRKY domain
PROSITE profilePS5081123.112219277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-37376451IPR003657WRKY domain
SuperFamilySSF1182901.7E-29383451IPR003657WRKY domain
PROSITE profilePS5081138.526386451IPR003657WRKY domain
SMARTSM007741.4E-38391450IPR003657WRKY domain
PfamPF031065.4E-26392449IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MTAAPGSLPL VNSRPVSLSL AASRSSFSSL LSGGAGSSLN LMTPPSSLPP SSPSSYFGGV  60
SSSGFLDSPI LLTPSLFPSP TTTGALFSWI TTATATAAIA PESQVQGGVK DEQQQYSDFT  120
FLPTASTAPA TTMAGATATT SNSFMQDSML MAPLGGDPYN GEQQQPWSYQ EPTMDADTRP  180
AEFTSSAAAG DVAGNGSYSQ VAAPAAAGGF RQQSRRSSDD GYNWRKYGQK QMKGSENPRS  240
YYKCTFPGCP TKKKVEQSPD GQVTEIVYKG AHSHPKPPQN GRGRGGSGYA LHGGAASDAY  300
SSADALSGTP VATPENSSAS FGDDEAVNGV SSSLRVASSV GGGEDLDDDE PDSKRWRRDG  360
GDGEGVSLVA GNRTVREPRV VVQTMSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTA  420
GCPVRKHVER ASNDLRAVIT TYEGKHNHDV PAARGSAAAA LYRATPPPQA SNAGMMPTTA  480
QPSSYLQGGG GVLPAGGYGA SYGGAPTTTQ PANGGGFAAL SGRFDDDATG ASYSYTSQQQ  540
QQPNDAVYYA SRAKDEPRDD GIMSFFEQPL LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36219452878Probable WRKY transcription factor 4
2lex_A2e-36219452878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.501080.0callus| leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379894900.0
Expression AtlasQ65WW1-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g39720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g39720
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981840.0DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637836.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-141WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLQ65WW10.0Q65WW1_ORYSJ; Os05g0474800 protein
TrEMBLQ6IEL10.0Q6IEL1_ORYSI; WRKY transcription factor 70
STRINGOS05T0474800-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-85WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Ryu HS, et al.
    A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.
    Plant Cell Rep., 2006. 25(8): p. 836-47
    [PMID:16528562]
  3. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  4. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  5. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]