PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g38620.1 | ||||||||
Common Name | Os05g0461200, OSNPB_050461200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 21643.5 Da PI: 10.6554 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.0004 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F++ L H +H LOC_Os05g38620.1 41 FECRTCGRRFPTFQALGGHRASH 63 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.88E-7 | 39 | 63 | No hit | No description |
Pfam | PF13912 | 1.6E-11 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.554 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.88E-7 | 115 | 142 | No hit | No description |
Pfam | PF13912 | 6.8E-9 | 119 | 144 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.3 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSKRQFGEMD GGIDTARVLM LLSRRRRQHG DVGHARAARV FECRTCGRRF PTFQALGGHR 60 ASHKRPRHGA ERAPRPAGDD DVGAGAGAAL RLVGAASSLS TDEARAGGGG RRTRGAGAAH 120 GCPVCGLEFA VGQALGGHMR RHRAAAGDVA APRVKTDDVV VGDECTGGIC LDLNLTPSEN 180 CDKCRHAQLG VAVNSVQRTI LLDRPL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | A0A0P0WND1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g38620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g38620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC117265 | 0.0 | AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881071.1 | 1e-143 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0E0PNK5 | 1e-142 | A0A0E0PNK5_ORYRU; Uncharacterized protein | ||||
TrEMBL | A0A0P0WND1 | 1e-142 | A0A0P0WND1_ORYSJ; Os05g0461200 protein | ||||
STRING | ORUFI05G20540.1 | 1e-143 | (Oryza rufipogon) | ||||
STRING | OS05T0461200-00 | 1e-143 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6282 | 21 | 38 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-23 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g38620.1 |