PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37640.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 396aa    MW: 41158.5 Da    PI: 6.4712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37e-17163210555
               AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       GVr ++ +g+++AeIrd + ng  +r++lg+f t+e+Aa a+++a+++ +g
  LOC_Os05g37640.1 163 GVRKRP-WGKYAAEIRDSTRNG--ARVWLGTFNTPEQAALAYDQAALSVRG 210
                       9*****.**********44465..***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.705160218IPR001471AP2/ERF domain
PRINTSPR003671.9E-7161172IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20162219IPR016177DNA-binding domain
SMARTSM003807.9E-29163224IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-26163219IPR001471AP2/ERF domain
CDDcd000183.02E-20163218No hitNo description
PfamPF008479.2E-12163210IPR001471AP2/ERF domain
PRINTSPR003671.9E-7184200IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT  60
SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD DAADISALME AASISCWTTN  120
GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SSDKEEAARP LIGVRKRPWG KYAAEIRDST  180
RNGARVWLGT FNTPEQAALA YDQAALSVRG PGAVLNYPLH RVRESLRTLE LGAAAAASES  240
PVLTLKRRHR IRKRSTTKKA LAGKEADEAP ATTSSEGKKK RQVNTTSHSH DGAWRRHLLS  300
SGRLSMEGST AAGGHGGLAG GRGEAAGSNV RAADDDEDGE AAAGSSVHVA NDDDDGSEAA  360
AVSSMHAADN DDEAVAGSGV RMTTTTAARR RSGAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22163220865ATERF1
3gcc_A3e-22163220865ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.518021e-178panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329737661e-178
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1306020.0AC130602.5 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1122D01, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638626.10.0ethylene-responsive transcription factor ERF094
TrEMBLA0A0E0PN970.0A0A0E0PN97_ORYRU; Uncharacterized protein
STRINGORUFI05G19730.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-35ethylene response factor 1