PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37170.8
Common NameLOC4338933, OSJNBa0020H14.17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 410aa    MW: 45646.3 Da    PI: 6.1895
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37170.8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.25.5e-1199128433
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                        k err+++NReAAr+sR+RKka++++Le+
  LOC_Os05g37170.8  99 AKTERRLAQNREAARKSRLRKKAYVQQLET 128
                       799*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-696172IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.38198142IPR004827Basic-leucine zipper domain
PfamPF001708.4E-899129IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.9E-7100129No hitNo description
SuperFamilySSF579591.04E-6100143No hitNo description
PROSITE patternPS000360103118IPR004827Basic-leucine zipper domain
PfamPF141443.5E-29181255IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSHLQEPYSN SQSVGSTTDS SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN  60
YKQGLGAAIA TAPSFQQHAG GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK  120
AYVQQLETSR IRLQQIEQEL QRARSQGLFP GGCSAPGDMS SGAVMFDMDY TRWIDDDSKC  180
MAELQGALQA QLPDGNLGAI VEECMRHYDE LFHLRAVLAS SDVFHLMTGM WAAPAERCFL  240
WMAGFRPSEI LKMLIPQLDP LTEQQLMGMC SLQQSSEQTE EALAQGLHQL HQSLADAVGG  300
GPLNDGADVA NYTGLMALAL GRLENLESFY RQADNLRQET LHHMRRILTT RQTARCFLSI  360
GEYNRRLRAL SSLWASRPRE NFIATENVSP TGTEFQVIQQ SQQNQFSGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.234690.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329947290.0
Expression AtlasQ6F2N0-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37170.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639069.10.0transcription factor TGAL5 isoform X15
RefseqXP_015639070.10.0transcription factor TGAL5 isoform X15
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLA0A0D3G8860.0A0A0D3G886_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HF710.0A0A0E0HF71_ORYNI; Uncharacterized protein
STRINGOS05T0443900-010.0(Oryza sativa)
STRINGOBART05G18270.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-137bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]