PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37170.8 | ||||||||
Common Name | LOC4338933, OSJNBa0020H14.17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 410aa MW: 45646.3 Da PI: 6.1895 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.2 | 5.5e-11 | 99 | 128 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ LOC_Os05g37170.8 99 AKTERRLAQNREAARKSRLRKKAYVQQLET 128 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-6 | 96 | 172 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.381 | 98 | 142 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.4E-8 | 99 | 129 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.9E-7 | 100 | 129 | No hit | No description |
SuperFamily | SSF57959 | 1.04E-6 | 100 | 143 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 103 | 118 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.5E-29 | 181 | 255 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MSHLQEPYSN SQSVGSTTDS SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN 60 YKQGLGAAIA TAPSFQQHAG GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK 120 AYVQQLETSR IRLQQIEQEL QRARSQGLFP GGCSAPGDMS SGAVMFDMDY TRWIDDDSKC 180 MAELQGALQA QLPDGNLGAI VEECMRHYDE LFHLRAVLAS SDVFHLMTGM WAAPAERCFL 240 WMAGFRPSEI LKMLIPQLDP LTEQQLMGMC SLQQSSEQTE EALAQGLHQL HQSLADAVGG 300 GPLNDGADVA NYTGLMALAL GRLENLESFY RQADNLRQET LHHMRRILTT RQTARCFLSI 360 GEYNRRLRAL SSLWASRPRE NFIATENVSP TGTEFQVIQQ SQQNQFSGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23469 | 0.0 | callus| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994729 | 0.0 | ||||
Expression Atlas | Q6F2N0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37170.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109520 | 0.0 | AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639069.1 | 0.0 | transcription factor TGAL5 isoform X15 | ||||
Refseq | XP_015639070.1 | 0.0 | transcription factor TGAL5 isoform X15 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A0D3G886 | 0.0 | A0A0D3G886_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0HF71 | 0.0 | A0A0E0HF71_ORYNI; Uncharacterized protein | ||||
STRING | OS05T0443900-01 | 0.0 | (Oryza sativa) | ||||
STRING | OBART05G18270.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-137 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37170.8 |
Entrez Gene | 4338933 |
Publications ? help Back to Top | |||
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