PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37170.5
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 437aa    MW: 48669.7 Da    PI: 5.8293
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37170.5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.16e-11126155433
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 
                        k err+++NReAAr+sR+RKka++++Le+
  LOC_Os05g37170.5 126 AKTERRLAQNREAARKSRLRKKAYVQQLET 155
                       799*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.9E-6123199IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.381125169IPR004827Basic-leucine zipper domain
PfamPF001709.1E-8126156IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-7127156No hitNo description
SuperFamilySSF579591.13E-6127170No hitNo description
PROSITE patternPS000360130145IPR004827Basic-leucine zipper domain
PfamPF141443.8E-29208282IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MIQSDAYTES GYLAARPPTL EIFPSWPMSH LQEPYSNSQS VGSTTDSSSA QNTMSQAELV  60
SPASMRSDSG QEQQQQEVLM VTIDDYNYKQ GLGAAIATAP SFQQHAGGLD MRKHGSTRKD  120
GKLLDAKTER RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQIEQELQRA RSQGLFPGGC  180
SAPGDMSSGA VMFDMDYTRW IDDDSKCMAE LQGALQAQLP DGNLGAIVEE CMRHYDELFH  240
LRAVLASSDV FHLMTGMWAA PAERCFLWMA GFRPSEILKM LIPQLDPLTE QQLMGMCSLQ  300
QSSEQTEEAL AQGLHQLHQS LADAVGGGPL NDGADVANYT GLMALALGRL ENLESFYRQA  360
DNLRQETLHH MRRILTTRQT ARCFLSIGEY NRRLRALSSL WASRPRENFI ATENVSPTGT  420
EFQVIQQSQQ NQFSGF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.234690.0callus| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329947290.0
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37170.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1095200.0AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639065.20.0transcription factor TGAL5 isoform X9
SwissprotQ6F2N00.0TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBLI1PW370.0I1PW37_ORYGL; Uncharacterized protein
STRINGORGLA05G0158500.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-137bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]