PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37170.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 437aa MW: 48669.7 Da PI: 5.8293 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 6e-11 | 126 | 155 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ LOC_Os05g37170.5 126 AKTERRLAQNREAARKSRLRKKAYVQQLET 155 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-6 | 123 | 199 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.381 | 125 | 169 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.1E-8 | 126 | 156 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.3E-7 | 127 | 156 | No hit | No description |
SuperFamily | SSF57959 | 1.13E-6 | 127 | 170 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 130 | 145 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.8E-29 | 208 | 282 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 437 aa Download sequence Send to blast |
MIQSDAYTES GYLAARPPTL EIFPSWPMSH LQEPYSNSQS VGSTTDSSSA QNTMSQAELV 60 SPASMRSDSG QEQQQQEVLM VTIDDYNYKQ GLGAAIATAP SFQQHAGGLD MRKHGSTRKD 120 GKLLDAKTER RLAQNREAAR KSRLRKKAYV QQLETSRIRL QQIEQELQRA RSQGLFPGGC 180 SAPGDMSSGA VMFDMDYTRW IDDDSKCMAE LQGALQAQLP DGNLGAIVEE CMRHYDELFH 240 LRAVLASSDV FHLMTGMWAA PAERCFLWMA GFRPSEILKM LIPQLDPLTE QQLMGMCSLQ 300 QSSEQTEEAL AQGLHQLHQS LADAVGGGPL NDGADVANYT GLMALALGRL ENLESFYRQA 360 DNLRQETLHH MRRILTTRQT ARCFLSIGEY NRRLRALSSL WASRPRENFI ATENVSPTGT 420 EFQVIQQSQQ NQFSGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23469 | 0.0 | callus| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994729 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37170.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109520 | 0.0 | AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639065.2 | 0.0 | transcription factor TGAL5 isoform X9 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | I1PW37 | 0.0 | I1PW37_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0158500.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-137 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37170.5 |
Publications ? help Back to Top | |||
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