PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37170.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 438aa MW: 48740.8 Da PI: 5.8293 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.1 | 6e-11 | 127 | 156 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ LOC_Os05g37170.3 127 AKTERRLAQNREAARKSRLRKKAYVQQLET 156 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-6 | 124 | 200 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.381 | 126 | 170 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.1E-8 | 127 | 157 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.13E-6 | 128 | 171 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.3E-7 | 128 | 157 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 131 | 146 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.8E-29 | 209 | 283 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MIQSDAYTES AGYLAARPPT LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL 60 VSPASMRSDS GQEQQQQEVL MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK 120 DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQGLFPGG 180 CSAPGDMSSG AVMFDMDYTR WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF 240 HLRAVLASSD VFHLMTGMWA APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL 300 QQSSEQTEEA LAQGLHQLHQ SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ 360 ADNLRQETLH HMRRILTTRQ TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG 420 TEFQVIQQSQ QNQFSGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23469 | 0.0 | callus| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994729 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37170.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109520 | 0.0 | AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639069.1 | 0.0 | transcription factor TGAL5 isoform X15 | ||||
Refseq | XP_015639070.1 | 0.0 | transcription factor TGAL5 isoform X15 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A0D3G886 | 0.0 | A0A0D3G886_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G18270.2 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-137 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37170.3 |
Publications ? help Back to Top | |||
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