PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 541aa MW: 59424 Da PI: 6.0877 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.7 | 7.8e-11 | 230 | 259 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ LOC_Os05g37170.1 230 AKTERRLAQNREAARKSRLRKKAYVQQLET 259 699*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-6 | 227 | 303 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.381 | 229 | 273 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.2E-7 | 230 | 260 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.53E-6 | 231 | 274 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.6E-7 | 231 | 260 | No hit | No description |
CDD | cd14708 | 5.18E-21 | 231 | 283 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 234 | 249 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 5.3E-29 | 312 | 386 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MHGACMCEPS SLVSTAATSL FFVKLRVVLI GMVQGEGSSW RMANDHDRAV PHSQAVAYGI 60 QGHAVLAAPP ANFLELQPAA AAYFGELEKA LIHGTSAGAG VDHGMIQSDA YTESGYLAAR 120 PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ 180 EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA GGLDMRKHGS TRKDGKLLDA KTERRLAQNR 240 EAARKSRLRK KAYVQQLETS RIRLQQIEQE LQRARSQGLF PGGCSAPGDM SSGAVMFDMD 300 YTRWIDDDSK CMAELQGALQ AQLPDGNLGA IVEECMRHYD ELFHLRAVLA SSDVFHLMTG 360 MWAAPAERCF LWMAGFRPSE ILKMLIPQLD PLTEQQLMGM CSLQQSSEQT EEALAQGLHQ 420 LHQSLADAVG GGPLNDGADV ANYTGLMALA LGRLENLESF YRQADNLRQE TLHHMRRILT 480 TRQTARCFLS IGEYNRRLRA LSSLWASRPR ENFIATENVS PTGTEFQVIQ QSQQNQFSGF 540 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23469 | 0.0 | callus| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994729 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37170 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109520 | 0.0 | AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639065.2 | 0.0 | transcription factor TGAL5 isoform X9 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | I1PW37 | 0.0 | I1PW37_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0158500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3809 | 31 | 66 | Representative plant | OGRP10696 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-138 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37170.1 |
Publications ? help Back to Top | |||
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