PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g37080.1 | ||||||||
Common Name | B1110B01.14, LOC4338926, NAC12, Os05g0442700, OSJNBa0020H14.9, OSNPB_050442700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 275aa MW: 30459.4 Da PI: 5.2477 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 139.2 | 2.5e-43 | 4 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppG+rF Pt+eelv++yL++k++g + ++e+vi+ +d+++++Pw+Lp+ + +++ + w++F++r++++a+g r++r+t sgyWka g LOC_Os05g37080.1 4 LPPGYRFYPTEEELVCFYLRHKLDGGRrvPDIERVIPVADVCSLDPWQLPEahqgAWTGDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAG 96 79***********************9988788889**************95344433447789****************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + v+s++g+ +g+kkt+vfy+grap g kt+W m+eyr+ LOC_Os05g37080.1 97 TPGWVYSSDGRPIGTKKTMVFYRGRAPAGAKTKWKMNEYRA 137 ***************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-50 | 3 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 47.9 | 4 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-24 | 5 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MGELPPGYRF YPTEEELVCF YLRHKLDGGR RVPDIERVIP VADVCSLDPW QLPEAHQGAW 60 TGDGEPWFYF CPRQEREARG GRPSRTTPSG YWKAAGTPGW VYSSDGRPIG TKKTMVFYRG 120 RAPAGAKTKW KMNEYRAFEE DDDNAAAAAP AQNHYLQTRS DFSLCRLYTR SGCPRQFDRR 180 PPSSSVAGGG GENRAAPSST AAAFANEDAA ESSGKSQKRK RSAPDDSLDS TSSSDDNGGC 240 DGSMLQQQQQ RQRGTDEELV ECSMTDWADL LDWF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-32 | 4 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-32 | 4 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-32 | 4 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-32 | 4 | 170 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 4 | 170 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-32 | 4 | 170 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-32 | 4 | 170 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51783 | 0.0 | root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32973721 | 0.0 | ||||
Expression Atlas | Q6F2M8 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g37080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g37080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063703 | 0.0 | AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence. | |||
GenBank | JN185442 | 0.0 | JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638341.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-63 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | Q6F2M8 | 0.0 | Q6F2M8_ORYSJ; 'putative no apical meristem (NAM) protein, PF02365 | ||||
STRING | OS05T0442700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 3e-64 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g37080.1 |
Entrez Gene | 4338926 |
Publications ? help Back to Top | |||
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