PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g37060.1
Common NameB1110B01.12, LOC4338925, Os05g0442400, OsJ_18706, OSJNBa0020H14.7, OSNPB_050442400
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 183aa    MW: 20381.6 Da    PI: 7.8409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g37060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding271e-082773347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +W++ Ed+ +  a   ++ +   +W+++a++++ gR++ ++ +++q +
  LOC_Os05g37060.1 27 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYQVL 73
                      8***************9999999**********.************86 PP
2Myb_DNA-binding45.32.1e-14114158347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
  LOC_Os05g37060.1 114 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 158
                       8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512948.1472078IPR017930Myb domain
SMARTSM007172.7E-72476IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-72671IPR009057Homeodomain-like
SuperFamilySSF466895.31E-122681IPR009057Homeodomain-like
PfamPF002492.7E-72773IPR001005SANT/Myb domain
CDDcd001671.02E-62774No hitNo description
PROSITE profilePS5129419.617107163IPR017930Myb domain
SuperFamilySSF466895.18E-18109163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16111162IPR006447Myb domain, plants
SMARTSM007172.8E-10111161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-11113154IPR009057Homeodomain-like
PfamPF002498.1E-11114157IPR001005SANT/Myb domain
CDDcd001672.60E-11114159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAFYLGSMGG SPSSWGVAEV PVPSSRPWSK AEDKVFESAL VAFPEHTHNR WALVASRLPG  60
RSAHEVWEHY QVLVDDVDLI ERGMVASPGC WDDDNNSAGH GRGSGGDERR RGVPWTEEEH  120
RLFLEGLEKY GRGDWRNISR WSVKTRTPTQ VASHAQKFFI RQANASSRGD SKRKSIHDIT  180
AP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-142489772RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.549340.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329923430.0
Expression AtlasQ6F2M6-
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g37060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g37060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071340.0AK107134.1 Oryza sativa Japonica Group cDNA clone:002-124-C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638220.11e-132transcription factor DIVARICATA
SwissprotQ8S9H78e-49DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9ZZV11e-131A0A0D9ZZV1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0PN451e-131A0A0E0PN45_ORYRU; Uncharacterized protein
TrEMBLA2Y5551e-131A2Y555_ORYSI; Uncharacterized protein
TrEMBLQ6F2M61e-131Q6F2M6_ORYSJ; Os05g0442400 protein
STRINGOGLUM05G19240.11e-131(Oryza glumipatula)
STRINGORUFI05G19340.11e-131(Oryza rufipogon)
STRINGOS05T0442400-011e-131(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-42MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]