PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g36900.1 | ||||||||
Common Name | LOC4338919, Os05g0440000, OSNPB_050440000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Dof | ||||||||
Protein Properties | Length: 328aa MW: 34160.1 Da PI: 6.3366 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.5 | 1.2e-37 | 38 | 92 | 6 | 60 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +cprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ LOC_Os05g36900.1 38 PNCPRCESPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 92 68***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 9.0E-30 | 28 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.0E-31 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.723 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009037 | anatomy | lemma | ||||
PO:0001047 | developmental stage | lemma development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MLSSHCESML AYAAAAGRRA VVVDHHQRRY RPNVEVAPNC PRCESPNTKF CYYNNYSLSQ 60 PRYFCKGCRR YWTKGGSLRN VPVGGGCRKN RRGKAVRAMV GETMTARGGG GGGAAAFSHR 120 FHGPVRPDMI LEGMAGSTAA SAGLGEQPGV AAPDEKPAAA DGSTIDLALL YAKFLNHHQP 180 TMAEQGGGAA VPESVDTSSG SSSDRTTSPA AAQPAAAAAY GPGQDGLVGE PISTEEHGAA 240 AMARCAQALG ELNFSVDQIS CYTSLGLPTT DGGDLILPST LDQHAKYEPF DSLPEDALSL 300 HDIISGDDDV WCNALGCQGL EAALCRP* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115464132 | 0.0 | ||||
Expression Atlas | Q0DHU3 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g36900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g36900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147462 | 0.0 | AC147462.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1110B01, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638935.1 | 0.0 | uncharacterized protein LOC4338919 | ||||
TrEMBL | A0A0E0PN28 | 0.0 | A0A0E0PN28_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0DHU3 | 0.0 | Q0DHU3_ORYSJ; Os05g0440000 protein | ||||
STRING | ORUFI05G19200.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS05T0440000-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 6e-36 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g36900.1 |
Entrez Gene | 4338919 |