PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g36100.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 365aa    MW: 37064.1 Da    PI: 4.9708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g36100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-20163212255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  LOC_Os05g36100.1 163 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 212
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-37163226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-33163221IPR001471AP2/ERF domain
PROSITE profilePS5103225.686163220IPR001471AP2/ERF domain
PfamPF008471.2E-13163212IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22163221IPR016177DNA-binding domain
PRINTSPR003671.2E-11164175IPR001471AP2/ERF domain
CDDcd000182.86E-14171222No hitNo description
PRINTSPR003671.2E-11186202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MADQRRRFRG GGDWQASVDD VVDDGGELEA AAAAAARGSV LSGEYQAQEM STMVSALTWV  60
VAAGHDDHGG GQWSGLVDVP ATTLAGGGGG DYGHGAQGSY YYYGAAPTST PEFVAGGQQE  120
QLSSDVPQGG ASLGLAMDEH SPTYTVEASS SADQHGGGGG GRRYRGVRQR PWGKWAAEIR  180
DPHKAARVWL GTFETAEAAA RAYDEAALRF RGSRAKLNFP EDARLSSPPA GAGAGGATAA  240
AQTVPVAYPA SAVSDYLQYQ MLLHGGGGGG GGRYPLYYGG GAAAAMSSSL GPYSSIPTSS  300
VTVASVPSSS SAASSSSGYG APAEHGEAVQ WTSWPDGGGW TYPATTSSWS GSSQYPPPPR  360
PPQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-24161220363ATERF1
3gcc_A9e-24161220363ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977241620.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g36100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g36100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053180.0AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.20.0ethylene-responsive transcription factor ABR1
TrEMBLA2Y5180.0A2Y518_ORYSI; Uncharacterized protein
STRINGORUFI05G19030.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-16ethylene response factor 110