PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34940.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22433.2 Da PI: 10.0441 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86 | 2.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRr+gilKKA E+ vLCdaev v+ifss gkl +y++ LOC_Os05g34940.3 9 KRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCT 59 79***********************************************96 PP | |||||||
2 | K-box | 69.6 | 9.6e-24 | 71 | 159 | 1 | 93 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++sgk l+++k++sl+ e++++kke++n+q e+Rh++GedL+sL+ keL +e++L+++ + R+k +++++++ ++ ++ e+e +k+ LOC_Os05g34940.3 71 YQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDKMMDHWRMHKRNEKMLEDE----HKM 159 89999999***********************************************************9777776666666655555....444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.469 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.42E-39 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-32 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.8E-16 | 82 | 163 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.726 | 84 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010097 | Biological Process | specification of stamen identity | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT FSKRRAGILK KAREIGVLCD AEVGVVIFSS AGKLSDYCTP 60 KTTLSRILEK YQTNSGKILW DEKHKSLSAE IDRVKKENDN MQIELRHMKG EDLNSLQPKE 120 LIAIEEALNN GQANLRDKMM DHWRMHKRNE KMLEDEHKML AFRVVISFRV TCFSIELSLE 180 KFLVFSFLFL KTI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-18 | 1 | 86 | 1 | 78 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.2214 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32985442 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in lodicules, at intermediate levels in stamens, and weakly in carpels. Expressed in pollen. {ECO:0000269|PubMed:10394955, ECO:0000269|PubMed:12905025, ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34940.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34940 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | RICOSMAA | 0.0 | L37527.1 Oryza sativa MADS box protein (MADS4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881489.1 | 1e-118 | MADS-box transcription factor 4 isoform X1 | ||||
Swissprot | Q40703 | 1e-116 | MADS4_ORYSJ; MADS-box transcription factor 4 | ||||
TrEMBL | B8AYK1 | 1e-116 | B8AYK1_ORYSI; Uncharacterized protein | ||||
TrEMBL | B9FPP6 | 1e-116 | B9FPP6_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1PVS6 | 1e-116 | I1PVS6_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA05G0147400.1 | 1e-117 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-65 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34940.3 |