PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34830.2 | ||||||||
Common Name | LOC4338832, OSJNBb0092E21.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 258aa MW: 27338.8 Da PI: 9.5722 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.4 | 8.7e-30 | 5 | 77 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+v + + v +kk Lvfy g+apkg kt+W+mheyrl LOC_Os05g34830.2 5 GEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPVGT--PRPVAIKKALVFYAGKAPKGDKTNWIMHEYRL 77 579************************************99..779***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.338 | 1 | 103 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-36 | 3 | 103 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-14 | 9 | 77 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MALYGEKEWY FFSPRDRKYP NGSRPNRAAG SGYWKATGAD KPVGTPRPVA IKKALVFYAG 60 KAPKGDKTNW IMHEYRLADV DRSARKKNTL RLDDWVLCRI YNKKGGVEKP SGGGGGERSN 120 MMSHGETASA GSPPEQKPAV LPPPPPPYAA AAPFSELAAF YDVRPSDSVP RAHGADSSCS 180 EHVLTTSASS GGVVERPEVQ SQPKIAEWER TFAGAAAPAG AVSTAGPILG QLDPAAAVAG 240 GGDPLLQDIL MYWGKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-49 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-49 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-49 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-49 | 2 | 109 | 66 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-49 | 2 | 109 | 69 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-49 | 2 | 109 | 66 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-49 | 2 | 109 | 66 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51926 | 1e-76 | callus| flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115484514 | 1e-76 | ||||
Expression Atlas | Q6L4Y5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses (PubMed:20632034). Transcription activator involved in response to abiotic and biotic stresses. Involved in drought and salt stress responses, and defense response to the rice blast fungus (PubMed:17587305). Transcription activator involved tolerance to cold and salt stresses (PubMed:18273684). Transcription activator involved in tolerance to drought stress. Targets directly and activates genes involved in membrane modification, nicotianamine (NA) biosynthesis, glutathione relocation, accumulation of phosphoadenosine phosphosulfate and glycosylation in roots (PubMed:27892643). Controls root growth at early vegetative stage through chromatin modification and histone lysine deacytaltion by HDAC1 (PubMed:19453457). {ECO:0000269|PubMed:17587305, ECO:0000269|PubMed:18273684, ECO:0000269|PubMed:19453457, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34830.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress, cold stress and abscisic acid (ABA) (PubMed:20632034, PubMed:27892643). Induced by methyl jasmonate (PubMed:20632034, PubMed:11332734). Induced by infection with the rice blast fungus Magnaporthe oryzae (PubMed:11332734). {ECO:0000269|PubMed:11332734, ECO:0000269|PubMed:20632034, ECO:0000269|PubMed:27892643}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34830 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107746 | 0.0 | AK107746.1 Oryza sativa Japonica Group cDNA clone:002-132-H04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637488.1 | 0.0 | NAC domain-containing protein 48-like | ||||
Swissprot | Q7F2L3 | 1e-111 | NAC48_ORYSJ; NAC domain-containing protein 48 | ||||
TrEMBL | Q6L4Y5 | 0.0 | Q6L4Y5_ORYSJ; Putative no apical meristem (NAM) protein | ||||
STRING | OGLUM05G17980.1 | 1e-162 | (Oryza glumipatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 2e-70 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34830.2 |
Entrez Gene | 4338832 |