PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34450.1 | ||||||||
Common Name | LOC4338805, Os05g0417000, OSJNBa0084P24.15, OSNPB_050417000, P0579A05.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | LBD | ||||||||
Protein Properties | Length: 280aa MW: 28044.3 Da PI: 8.1341 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140 | 7.8e-44 | 39 | 137 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ LOC_Os05g34450.1 39 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 131 7******************************************************************************************** PP DUF260 94 lallke 99 l++++ LOC_Os05g34450.1 132 LSRARF 137 *99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.861 | 38 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-44 | 39 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MAASSSASSL PLSSGSVITV SSSPAVGASS GGGGGTGSPC AACKFLRRKC QPDCVFAPYF 60 PPDNPQKFVH VHRVFGASNV TKLLNELHPY QREDAVNSLA YEADMRLRDP VYGCVGVISV 120 LQHQLRQLQQ DLSRARFELS KYQAAVAVSS SNGQAAAAAA MVDHFIGSAV QPNCTQNFIS 180 GGGVAAAAIG IGGGAGGGFV NDHHQFSAVQ MLARSYDGES AVARLGGAVN VSGGGGYEFG 240 YSSAMGGAGG PMSGLGPLGG GTFLKPGTAG GGDRPTAAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-55 | 35 | 142 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-55 | 35 | 142 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.82290 | 0.0 | leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115463918 | 0.0 | ||||
Expression Atlas | Q6AT73 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In embryo sac, detected as early as the one-nucleus stage. In older embryo sacs, highest expression in antipodal cells. {ECO:0000269|PubMed:17209126}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, leaf primordia, immature ears, immature tassels, whole ovules, silk and husk leaves. Found on the adaxial side of organs. {ECO:0000269|PubMed:17209126}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34450 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134933 | 0.0 | AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence. | |||
GenBank | AC137617 | 0.0 | AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640070.1 | 0.0 | LOB domain-containing protein 6 | ||||
Refseq | XP_015640071.1 | 0.0 | LOB domain-containing protein 6 | ||||
Refseq | XP_025881387.1 | 0.0 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 1e-108 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | Q6AT73 | 0.0 | Q6AT73_ORYSJ; Os05g0417000 protein | ||||
STRING | OS05T0417000-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 6e-54 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34450.1 |
Entrez Gene | 4338805 |