PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os05g34050.1 | ||||||||
Common Name | LOC4338781, Os05g0411300, OsJ_18536, OSNPB_050411300, P0668F02.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 647aa MW: 68810 Da PI: 7.2879 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.2 | 7.4e-13 | 170 | 231 | 1 | 62 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ + +L ++++ e a+l+++ LOC_Os05g34050.1 170 EEDERRAARLMRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSRISFVVAENATLRQQ 231 677899**********************************9999***999888888888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.8E-15 | 170 | 234 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 7.4E-11 | 172 | 232 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.174 | 172 | 232 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.3E-15 | 174 | 233 | No hit | No description |
SuperFamily | SSF57959 | 1.38E-11 | 174 | 232 | No hit | No description |
CDD | cd14704 | 1.78E-18 | 179 | 226 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MAEPALLDPT AAFDLRLYPA HLFDHELPLA GGGGGDDDDD LPLDGLEFDL PGDFSVEDFL 60 LRSPERDDSG EGSAAGSGPT ASPSSSPTTS ASNSAVANGS GGEVKHEESD EGRSGGGDPK 120 WSLKRKQASP GPSSDAAKCR RSGDGDVSPS ASASRTAVDS DEGGTVCEEE EDERRAARLM 180 RNRESAQLSR QRKKRYVEEL EEKVKSMHSV INDLNSRISF VVAENATLRQ QLSGGSVNCP 240 PPGVYPPAPI PGMHFPWMPG YAMRPPGSHV PLVPIPRLKP QQPVPSSKVV KKPESKKTVE 300 NKSKSKTKTK KVASVSLLGL LLIMLVFGAF IPGFNHNFGM CGQSDNAMFR NFGQSHARVL 360 SVSSQDKSSL NNSDMIGVDV GKMTGNTDGP GKKHQPAHNS SEILPALLYV PRNGKHVKIN 420 GNLIIHSVLA SEKAVAHKAS KDDSDQSARD HKETSVAIAR YLSLPGKDVN RQETSSADGP 480 LPQWFREGME GPILNSGMCS EVFQFDISTA SSNPGGIIPA SPVVNSSSVN ATEKIPAHSA 540 AYHGKLKNRR VMYNEAIPLT GKTANNTEPF NRTSESSSKL PDSKPASSVV VSVLADPREA 600 GNGDGDPRVS PKPLSKIFVV VLVDGVRYVT YSCTLPFKSS SPHLVN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.5535 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116632236 | 0.0 | ||||
Expression Atlas | Q6AU90 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf blade, and at lower levels in roots, leaf sheaths, flowers and seeds. {ECO:0000269|PubMed:22084314}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os05g34050.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os05g34050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073142 | 0.0 | AK073142.1 Oryza sativa Japonica Group cDNA clone:J033024D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640085.1 | 0.0 | bZIP transcription factor 39 | ||||
Swissprot | Q6AU90 | 0.0 | BZP39_ORYSJ; bZIP transcription factor 39 | ||||
TrEMBL | A2Y4M9 | 0.0 | A2Y4M9_ORYSI; Uncharacterized protein | ||||
STRING | OS05T0411300-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8228 | 35 | 45 | Representative plant | OGRP2171 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40950.1 | 1e-77 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os05g34050.1 |
Entrez Gene | 4338781 |
Publications ? help Back to Top | |||
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