PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g32880.1
Common NameLOC107275887, Os05g0395600, OSJNBa0014C03.14, OSJNBb0092G21.3, RR27
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 514aa    MW: 54585.4 Da    PI: 5.4452
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g32880.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like482.7e-15158211255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgL..tlehvkSHLQkYRl 55 
                       +r  Wt+  H++Fv+a eqL  +++  Pk+i++lm+++g+  t ++v SHLQkYR+
  LOC_Os05g32880.1 158 TRFTWTTVSHTSFVRAYEQL--KDQEGPKKIKQLMELDGIfvTKTQVSSHLQKYRS 211
                       799*****************..999**************655999**********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-9156215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-14157214IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-11158211IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MVMRTVMNGA CDYMVKPMTS EAIKFIWKHV LRWRLSALPA NASSSLQPSD HLAAALAAVA  60
PPPPPAVQLP AAPAQAGNRD GEAHEEAELS TQPPALVPSG VQEAAAAVWS SRGDGQEAPP  120
PAVAAAAKAP SKKRGASEVS DRGSNNLEAT TGRKKVRTRF TWTTVSHTSF VRAYEQLKDQ  180
EGPKKIKQLM ELDGIFVTKT QVSSHLQKYR SWLENERKKE EATSSSPCNP LSYTNCLDRG  240
YSTWKQSSVI TEGQQSSSFS GRPIHSMATS NGCLTTTDTQ AGNYVGVGAK EIENFISSHQ  300
RSLGTAIGQE STIEQASLHS EITSVSRDAH ENGNSQARGS AMSNGTSGTR GVLVTNENLL  360
HVVSASLPSN MGQPTQPSQS FCTNELAANY SIISDQNPGT SHPTSSSAIN NQNSKTQEMS  420
VSQTVELGCG NDVMLDWPEL VGLEDQLDND VLMNSFFDGD LLQQGVVTAI DGTQEMLAFD  480
STGDLGSVPP RGLNNEIASH ENTNGKNGAS SGP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1022770.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160120870.0
Expression AtlasQ75HW2-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g32880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: Dwarf, narrow leaf, lesion mimic, low tillering, altered kernel color, viviparous and low fertility phenotypes. {ECO:0000269|PubMed:16891544}.
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g32880
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2427220.0AK242722.1 Oryza sativa Japonica Group cDNA, clone: J090045F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639050.10.0two-component response regulator ORR27
SwissprotQ75HW20.0ORR27_ORYSJ; Two-component response regulator ORR27
TrEMBLA0A0D3G7B50.0A0A0D3G7B5_9ORYZ; Uncharacterized protein
TrEMBLI1PVD90.0I1PVD9_ORYGL; Uncharacterized protein
STRINGOS05T0395600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159621113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-10response regulator 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Pareek A, et al.
    Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis.
    Plant Physiol., 2006. 142(2): p. 380-97
    [PMID:16891544]
  3. Schaller GE, et al.
    Nomenclature for two-component signaling elements of rice.
    Plant Physiol., 2007. 143(2): p. 555-7
    [PMID:17284581]