PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g32070.1
Common NameOJ1286_E05.15, OSJNBa0073E05.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SRS
Protein Properties Length: 331aa    MW: 33183.7 Da    PI: 8.5011
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g32070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.61.9e-691042693154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstkl 91 
                       sg+a+C+dCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerqq + aass  ++sa    ++a++k++r l s++++++s+t++
  LOC_Os05g32070.1 104 SGAATCHDCGNQAKKDCVHHRCRTCCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTSSAfpaaTTASAKKPRLLGSQTTTTTSRTST 196
                       7889*************************************************9999999999889988899999****99************ PP

            DUF702  92 ssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                       s+a+++++++tss          lP++v+++avfrcvrv+svddg++e+aYq+av+i+Gh+f+G+LydqG+++
  LOC_Os05g32070.1 197 SNATTPRSFDTSSshqvasfrdaLPRHVRAPAVFRCVRVTSVDDGDDEFAYQAAVTINGHMFRGFLYDQGADD 269
                       ***********999********************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-61106268IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-27108150IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.3E-25220266IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVLVAPAASY HHHRAAAAAA AAAAAAAAAE PVFPLLGTGQ CALDADTAKS SGAAAAAGVP  60
PGSASAIHFW QSQPTTAAGA GGGSADKKPL PMLDYGGIGG PGGSGAATCH DCGNQAKKDC  120
VHHRCRTCCK SRGFDCPTHV RSTWVPAARR RERQQLAGAA SSPPTSSAFP AATTASAKKP  180
RLLGSQTTTT TSRTSTSNAT TPRSFDTSSS HQVASFRDAL PRHVRAPAVF RCVRVTSVDD  240
GDDEFAYQAA VTINGHMFRG FLYDQGADDG RGGMASTSND ESSHGAGAAV PSISDLHLGS  300
ASAAVPPHLY SGGSGGPLIL GGLGYGNTMN *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AV91
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}.
UniprotTISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g32070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g32070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1047100.0AC104710.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1286_E05, complete sequence.
GenBankAC1362190.0AC136219.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0073E05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881073.10.0protein LATERAL ROOT PRIMORDIUM 1
SwissprotQ94CK91e-59LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0E0PLV60.0A0A0E0PLV6_ORYRU; Uncharacterized protein
TrEMBLB8AXT90.0B8AXT9_ORYSI; Uncharacterized protein
TrEMBLC7J3190.0C7J319_ORYSJ; Os05g0386201 protein
TrEMBLI1PV750.0I1PV75_ORYGL; Uncharacterized protein
TrEMBLQ6AV910.0Q6AV91_ORYSJ; Uncharacterized protein
STRINGORUFI05G15960.10.0(Oryza rufipogon)
STRINGORGLA05G0127300.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35793679
Representative plantOGRP13131549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-54Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]