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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LOC_Os05g31420.1 |
Common Name | OJ1126_B11.2, Os05g0378500, OSJNBa0039A21.10, OSNPB_050378500 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family |
GRAS |
Protein Properties |
Length: 561aa MW: 58183.6 Da PI: 8.0504 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LOC_Os05g31420.1 | genome | MSU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 231.5 | 3.9e-71 | 157 | 558 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilk 92
L +cAea++++ + a+a La + +as+dgd++qR+aa f+eA+a+ + r + ++++al ps++ e+ +a++ f +++P+l
LOC_Os05g31420.1 157 HLRRCAEALAASRPADADAELASIARMASSDGDAVQRVAAAFAEAMARVVIRPWRGVSAALFPSDAGAAGdaltAWEAEFARQSFLNLCPLLH 249
6889*********************************************************66666544346767778888999********* PP
GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
++ ++ N+ Ile + +++ +Hi+D++ + ++W+ Llq La+R+ + p lR+T v++ +k+ l + ++ La ++ gvp++ ++ v++
LOC_Os05g31420.1 250 LAAVAVNEIILETTRNDKFIHIVDLGGIHHAHWVELLQGLATRRaAVRPCLRLTIVHE----HKHFLGQAAQVLAAESDRHGVPLDLHI-VES 337
*****************************************98867799*********....99************************9.799 PP
GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll.........................desvsleserdevLklvkslsPkvvvvveqeadhnses 252
++e+l+l++L v+++ a+++ + lqlhrl+ +++++s+ d++L+ + lsP+ ++++e+ea+h +s
LOC_Os05g31420.1 338 SVEALKLDALGVRSDHAVVIVSTLQLHRLVgagilsttappspaaaaaasmitspLPPANMSSKVDRLLRGFHLLSPRAIILTENEANHFVPS 430
****************************************************9987788888899**************************** PP
GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse..kaakqaklllr 342
F +rf++al yy lf ++e+ ++++ er+ Er ll++ei++v+ac ++ r +rhetl++W r+++aGF +p + +aa ++++ +
LOC_Os05g31420.1 431 FTDRFASALPYYEQLFAAMEEA-GAATVERKAAERYLLREEIKDVIACDHDGpRWARHETLGRWVVRMGAAGFALAPAITvvTAAGRVRAVAA 522
*******************887.78999*********************9988********************98876551144555566666 PP
GRAS 343 kvksdg....yrveeesgslvlgWkdrpLvsvSaWr 374
+ ++ g y v e g+l+l +++p++ vSaWr
LOC_Os05g31420.1 523 RLPGGGderrYGVTEGGGWLILNREEKPMFCVSAWR 558
6654334566*************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 561 aa
Download sequence Send
to blast |
MVAQAATAAA TTTAAATTAA VPMTNFQLFG SMVPVPVASM ATATAPAAVA AADNGGHGSS 60 SASQNASGSG EGQGGSMSLS LQLRPLGSTP TAAVAVSVPP MAAAPMMAGP AAAAPAPAPP 120 LATMAVAQNA SLAAVASALA AHRRNQATHR SAALHGHLRR CAEALAASRP ADADAELASI 180 ARMASSDGDA VQRVAAAFAE AMARVVIRPW RGVSAALFPS DAGAAGDALT AWEAEFARQS 240 FLNLCPLLHL AAVAVNEIIL ETTRNDKFIH IVDLGGIHHA HWVELLQGLA TRRAAVRPCL 300 RLTIVHEHKH FLGQAAQVLA AESDRHGVPL DLHIVESSVE ALKLDALGVR SDHAVVIVST 360 LQLHRLVGAG ILSTTAPPSP AAAAAASMIT SPLPPANMSS KVDRLLRGFH LLSPRAIILT 420 ENEANHFVPS FTDRFASALP YYEQLFAAME EAGAATVERK AAERYLLREE IKDVIACDHD 480 GPRWARHETL GRWVVRMGAA GFALAPAITV VTAAGRVRAV AARLPGGGDE RRYGVTEGGG 540 WLILNREEKP MFCVSAWRRQ *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC105767 | 0.0 | AC105767.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1126_B11, complete sequence. |
GenBank | AC136218 | 0.0 | AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |