PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os05g31380.1
Common NameOs05g0378200, OSJNBa0007A06.17, OSJNBa0039A21.7, OSNPB_050378200
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 552aa    MW: 56281 Da    PI: 5.3202
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os05g31380.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2322.6e-7112750634374
              GRAS  34 dgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdis.qGlQ 124
                       +g++ qRla+ f+eALa r    +++++++l+ +++++     + aa++ f  ++P+++++  +aN  I e +e e   vH++D++ +    Q
  LOC_Os05g31380.1 127 EGRSAQRLASAFAEALALRFILPCDGVCRSLHLTRAPP--PPAVSAARQGFRAMCPFVRLAAAAANLSIAEVMEAErAVVHVVDLGGGvDANQ 217
                       5889***************************8888875..6677789999**************************5556*****9763699* PP

              GRAS 125 WpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.......eleeLrvkpgEalaVnlvlq 209
                       W+ L +  a+Rp+gpp  lR+T+v++    s++ l++++   a  A++l+++++f+++  +++e+l         ++L v pg  laV   lq
  LOC_Os05g31380.1 218 WVELVRLVAARPGGPPgLLRLTVVNE----SEDFLSAVAAYVAAEAQRLDLSLQFHPV-LSSIEELsatatgsIGSRLVVIPGQPLAVVANLQ 305
                       ************999989********....9**************************5.66666662222222235678888*********** PP

              GRAS 210 lhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpr 277
                       +hrll                          +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al+yy+alfd+l +++ p+
  LOC_Os05g31380.1 306 IHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNALNYYAALFDALeASSTPP 398
                       *************************99764455555589***********************************************5555666 PP

              GRAS 278 es...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg......yrveeesgslv. 359
                       ++   +er+ vEr +lg+ei+++v  eg+ rrerhetl++W er+ +aGF+pv+     a++  l  ++v+ + g       r  +  g++  
  LOC_Os05g31380.1 399 AAvppHERACVERWVLGEEIKDIVVREGTGRRERHETLGRWAERMVAAGFSPVTAARALASTETLAQQMVAaGGGgagagvLRAAHGGGCFPv 491
                       66899*************************************************988877776666666663333455544444455777757 PP

              GRAS 360 lgWkdrpLvsvSaWr 374
                       ++W d p++svS W+
  LOC_Os05g31380.1 492 ICWCDVPVFSVSTWT 506
                       **************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.02759478IPR005202Transcription factor GRAS
PfamPF035149.0E-69127506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MAVEIPRLAL GGGGGGAGGE RLPAAGEDSA PAATNAGKRP VVGLGFGSSL AAMAAAAAAG  60
IQPDAFALGG PAEYPAGDGE RDVLMVSFLR SIAAFLADGT CQMQVNDGLS CVVDLAGGDA  120
DGGGVGEGRS AQRLASAFAE ALALRFILPC DGVCRSLHLT RAPPPPAVSA ARQGFRAMCP  180
FVRLAAAAAN LSIAEVMEAE RAVVHVVDLG GGVDANQWVE LVRLVAARPG GPPGLLRLTV  240
VNESEDFLSA VAAYVAAEAQ RLDLSLQFHP VLSSIEELSA TATGSIGSRL VVIPGQPLAV  300
VANLQIHRLL AFPDYVDGVA SRRPAAEQSG SSQHTMTTAT KTKADALLRA IRDLNPKLVV  360
LTENEADHNV AELGARVWNA LNYYAALFDA LEASSTPPAA VPPHERACVE RWVLGEEIKD  420
IVVREGTGRR ERHETLGRWA ERMVAAGFSP VTAARALAST ETLAQQMVAA GGGGAGAGVL  480
RAAHGGGCFP VICWCDVPVF SVSTWTARRV LVPAPPLWPP AAAGGAGPSG SGYGGDGPST  540
ASSSAAMWWV G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2612850852380Protein SCARECROW
5b3h_D1e-2612850852380Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6AUP1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os05g31380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs05g31380
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209870.0AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence.
GenBankAC1362180.0AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881539.10.0scarecrow-like protein 3
TrEMBLQ6AUP10.0Q6AUP1_ORYSJ; Os05g0378200 protein
STRINGOS05T0378200-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170631012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-34scarecrow-like 3